Mercurial > repos > dave > pipelign

comparison test-data/files/long.2.hmm @ 0:9a3a2e04f47a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dave
date Mon, 10 Jun 2019 16:04:10 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:9a3a2e04f47a
1 HMMER3/f [3.2.1 | June 2018]
2 NAME long.2.aln
3 LENG 70
4 MAXL 188
5 ALPH DNA
6 RF no
7 MM no
8 CONS yes
9 CS no
10 MAP yes
11 DATE Tue May 28 13:12:02 2019
12 NSEQ 3
13 EFFN 3.000000
14 CKSUM 2903879936
15 STATS LOCAL MSV -9.1232 0.72663
16 STATS LOCAL VITERBI -9.3215 0.72663
17 STATS LOCAL FORWARD -3.0734 0.72663
18 HMM A C G T
19 m->m m->i m->d i->m i->i d->m d->d
20 COMPO 1.13844 1.68610 1.59008 1.23605
21 1.38629 1.38629 1.38629 1.38629
22 0.22977 3.95124 1.68173 1.46634 0.26236 0.00000 *
23 1 0.96677 1.92013 1.91053 1.12362 1 a - - -
24 1.38629 1.38629 1.38629 1.38629
25 0.04726 3.76874 3.76874 1.46634 0.26236 1.55497 0.23724
26 2 2.36920 2.17182 2.47016 0.34545 2 t - - -
27 1.83446 0.84257 1.83446 1.38629
28 0.42541 1.12882 3.76874 2.03997 0.13930 0.54886 0.86182
29 3 1.16410 2.43420 0.71774 2.18679 11 g - - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
32 4 2.00446 2.13960 0.87914 1.10134 12 g - - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
35 5 2.23985 1.03062 2.36449 0.81477 13 t - - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
38 6 0.94121 2.04768 2.06592 1.03815 14 a - - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
41 7 0.95731 2.35593 0.91678 2.10812 15 g - - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
44 8 0.94121 2.04768 2.06592 1.03815 16 a - - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
47 9 2.71655 2.45957 2.83486 0.23610 17 t - - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
50 10 2.06732 1.16410 0.86888 1.95298 18 g - - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
53 11 2.71655 2.45957 2.83486 0.23610 19 t - - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
56 12 1.16410 2.43420 0.71774 2.18679 20 g - - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
59 13 0.92413 1.09732 2.14928 1.87869 21 a - - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
62 14 2.89989 0.21012 3.04772 2.44162 22 c - - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
65 15 0.16029 3.12721 2.94402 2.96400 23 a - - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
68 16 2.00446 2.13960 0.87914 1.10134 24 g - - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
71 17 0.95731 2.35593 0.91678 2.10812 25 g - - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
74 18 0.94121 2.04768 2.06592 1.03815 26 a - - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
77 19 0.92413 1.09732 2.14928 1.87869 27 a - - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
80 20 0.16029 3.12721 2.94402 2.96400 28 a - - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
83 21 2.71655 2.45957 2.83486 0.23610 29 t - - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
86 22 2.71655 2.45957 2.83486 0.23610 30 t - - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
89 23 2.71655 2.45957 2.83486 0.23610 31 t - - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
92 24 2.71655 2.45957 2.83486 0.23610 32 t - - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
95 25 0.94121 2.04768 2.06592 1.03815 33 a - - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
98 26 0.92413 1.09732 2.14928 1.87869 34 a - - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
101 27 2.89989 0.21012 3.04772 2.44162 35 c - - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
104 28 0.16029 3.12721 2.94402 2.96400 36 a - - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
107 29 2.23985 1.03062 2.36449 0.81477 37 t - - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
110 30 1.16410 2.43420 0.71774 2.18679 38 g - - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
113 31 2.71655 2.45957 2.83486 0.23610 39 t - - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
116 32 2.72479 3.30093 0.15917 3.10680 40 g - - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
119 33 2.00446 2.13960 0.87914 1.10134 41 g - - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
122 34 0.94121 2.04768 2.06592 1.03815 42 a - - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
125 35 0.16029 3.12721 2.94402 2.96400 43 a - - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
128 36 0.16029 3.12721 2.94402 2.96400 44 a - - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
131 37 0.16029 3.12721 2.94402 2.96400 45 a - - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
134 38 0.16029 3.12721 2.94402 2.96400 46 a - - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
137 39 2.71655 2.45957 2.83486 0.23610 47 t - - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
140 40 2.00446 2.13960 0.87914 1.10134 48 g - - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
143 41 0.94121 2.04768 2.06592 1.03815 49 a - - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
146 42 2.26706 0.84214 2.39363 0.98270 50 c - - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
149 43 0.92413 1.09732 2.14928 1.87869 51 a - - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
152 44 2.71655 2.45957 2.83486 0.23610 52 t - - -
153 1.38629 1.38629 1.38629 1.38629
154 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
155 45 2.72479 3.30093 0.15917 3.10680 53 g - - -
156 1.38629 1.38629 1.38629 1.38629
157 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
158 46 2.00446 2.13960 0.87914 1.10134 54 g - - -
159 1.38629 1.38629 1.38629 1.38629
160 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
161 47 2.23985 1.03062 2.36449 0.81477 55 t - - -
162 1.38629 1.38629 1.38629 1.38629
163 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
164 48 0.16029 3.12721 2.94402 2.96400 56 a - - -
165 1.38629 1.38629 1.38629 1.38629
166 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
167 49 2.06732 1.16410 0.86888 1.95298 57 g - - -
168 1.38629 1.38629 1.38629 1.38629
169 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
170 50 0.16029 3.12721 2.94402 2.96400 58 a - - -
171 2.06732 2.06732 2.06732 0.47735
172 0.34065 1.31133 3.95124 1.13545 0.38754 1.09861 0.40547
173 51 0.16029 3.12721 2.94402 2.96400 62 a - - -
174 1.38629 1.38629 1.38629 1.38629
175 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
176 52 2.89989 0.21012 3.04772 2.44162 63 c - - -
177 1.38629 1.38629 1.38629 1.38629
178 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
179 53 0.92413 1.09732 2.14928 1.87869 64 a - - -
180 1.38629 1.38629 1.38629 1.38629
181 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
182 54 1.16410 2.43420 0.71774 2.18679 65 g - - -
183 1.38629 1.38629 1.38629 1.38629
184 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
185 55 0.16029 3.12721 2.94402 2.96400 66 a - - -
186 1.38629 1.38629 1.38629 1.38629
187 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
188 56 2.71655 2.45957 2.83486 0.23610 67 t - - -
189 1.38629 1.38629 1.38629 1.38629
190 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
191 57 1.16410 2.43420 0.71774 2.18679 68 g - - -
192 1.38629 1.38629 1.38629 1.38629
193 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
194 58 2.89989 0.21012 3.04772 2.44162 69 c - - -
195 1.38629 1.38629 1.38629 1.38629
196 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
197 59 0.94121 2.04768 2.06592 1.03815 70 a - - -
198 1.38629 1.38629 1.38629 1.38629
199 0.34065 3.95124 1.31133 1.46634 0.26236 1.09861 0.40547
200 60 2.19131 2.02277 2.27840 0.42542 71 t - - -
201 1.38629 1.38629 1.38629 1.38629
202 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
203 61 2.27199 2.66585 0.29804 2.46413 72 g - - -
204 1.38629 1.38629 1.38629 1.38629
205 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
206 62 0.34983 2.44790 2.25491 2.26497 73 a - - -
207 1.38629 1.38629 1.38629 1.38629
208 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
209 63 2.27199 2.66585 0.29804 2.46413 74 g - - -
210 1.38629 1.38629 1.38629 1.38629
211 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
212 64 2.27199 2.66585 0.29804 2.46413 75 g - - -
213 1.38629 1.38629 1.38629 1.38629
214 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
215 65 0.34983 2.44790 2.25491 2.26497 76 a - - -
216 1.38629 1.38629 1.38629 1.38629
217 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
218 66 2.19131 2.02277 2.27840 0.42542 77 t - - -
219 1.38629 1.38629 1.38629 1.38629
220 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
221 67 0.34983 2.44790 2.25491 2.26497 78 a - - -
222 1.38629 1.38629 1.38629 1.38629
223 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
224 68 2.19131 2.02277 2.27840 0.42542 79 t - - -
225 1.38629 1.38629 1.38629 1.38629
226 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
227 69 0.34983 2.44790 2.25491 2.26497 80 a - - -
228 1.38629 1.38629 1.38629 1.38629
229 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
230 70 0.34983 2.44790 2.25491 2.26497 81 a - - -
231 1.74658 1.12199 1.74658 1.12199
232 0.29394 1.36775 * 0.82573 0.57610 0.00000 *
233 //