Mercurial > repos > dave > pipelign

annotate test-data/files/long.2.hmm @ 0:9a3a2e04f47a draft default tip

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Uploaded
author dave
date Mon, 10 Jun 2019 16:04:10 -0400
parents
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0
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1 HMMER3/f [3.2.1 | June 2018]
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2 NAME long.2.aln
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3 LENG 70
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4 MAXL 188
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5 ALPH DNA
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6 RF no
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7 MM no
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8 CONS yes
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9 CS no
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10 MAP yes
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11 DATE Tue May 28 13:12:02 2019
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12 NSEQ 3
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13 EFFN 3.000000
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14 CKSUM 2903879936
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15 STATS LOCAL MSV -9.1232 0.72663
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16 STATS LOCAL VITERBI -9.3215 0.72663
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17 STATS LOCAL FORWARD -3.0734 0.72663
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18 HMM A C G T
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19 m->m m->i m->d i->m i->i d->m d->d
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20 COMPO 1.13844 1.68610 1.59008 1.23605
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21 1.38629 1.38629 1.38629 1.38629
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22 0.22977 3.95124 1.68173 1.46634 0.26236 0.00000 *
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26 2 2.36920 2.17182 2.47016 0.34545 2 t - - -
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28 0.42541 1.12882 3.76874 2.03997 0.13930 0.54886 0.86182
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157 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
158 46 2.00446 2.13960 0.87914 1.10134 54 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
159 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
160 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
161 47 2.23985 1.03062 2.36449 0.81477 55 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
162 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
163 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
164 48 0.16029 3.12721 2.94402 2.96400 56 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
165 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
166 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
167 49 2.06732 1.16410 0.86888 1.95298 57 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
168 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
169 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
170 50 0.16029 3.12721 2.94402 2.96400 58 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
171 2.06732 2.06732 2.06732 0.47735
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
172 0.34065 1.31133 3.95124 1.13545 0.38754 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
173 51 0.16029 3.12721 2.94402 2.96400 62 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
174 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
175 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
176 52 2.89989 0.21012 3.04772 2.44162 63 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
177 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
178 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
179 53 0.92413 1.09732 2.14928 1.87869 64 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
180 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
181 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
182 54 1.16410 2.43420 0.71774 2.18679 65 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
183 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
184 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
185 55 0.16029 3.12721 2.94402 2.96400 66 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
186 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
187 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
188 56 2.71655 2.45957 2.83486 0.23610 67 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
189 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
190 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
191 57 1.16410 2.43420 0.71774 2.18679 68 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
192 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
193 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
194 58 2.89989 0.21012 3.04772 2.44162 69 c - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
195 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
196 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
197 59 0.94121 2.04768 2.06592 1.03815 70 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
198 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
199 0.34065 3.95124 1.31133 1.46634 0.26236 1.09861 0.40547
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
200 60 2.19131 2.02277 2.27840 0.42542 71 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
201 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
202 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
203 61 2.27199 2.66585 0.29804 2.46413 72 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
204 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
205 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
206 62 0.34983 2.44790 2.25491 2.26497 73 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
207 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
208 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
209 63 2.27199 2.66585 0.29804 2.46413 74 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
210 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
211 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
212 64 2.27199 2.66585 0.29804 2.46413 75 g - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
213 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
214 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
215 65 0.34983 2.44790 2.25491 2.26497 76 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
216 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
217 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
218 66 2.19131 2.02277 2.27840 0.42542 77 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
219 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
220 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
221 67 0.34983 2.44790 2.25491 2.26497 78 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
222 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
223 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
224 68 2.19131 2.02277 2.27840 0.42542 79 t - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
225 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
226 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
227 69 0.34983 2.44790 2.25491 2.26497 80 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
228 1.38629 1.38629 1.38629 1.38629
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
229 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
230 70 0.34983 2.44790 2.25491 2.26497 81 a - - -
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
231 1.74658 1.12199 1.74658 1.12199
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
232 0.29394 1.36775 * 0.82573 0.57610 0.00000 *
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
233 //