Mercurial > repos > dave > pipelign
diff test-data/files/long.2.hmm @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/long.2.hmm Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,233 @@ +HMMER3/f [3.2.1 | June 2018] +NAME long.2.aln +LENG 70 +MAXL 188 +ALPH DNA +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue May 28 13:12:02 2019 +NSEQ 3 +EFFN 3.000000 +CKSUM 2903879936 +STATS LOCAL MSV -9.1232 0.72663 +STATS LOCAL VITERBI -9.3215 0.72663 +STATS LOCAL FORWARD -3.0734 0.72663 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.13844 1.68610 1.59008 1.23605 + 1.38629 1.38629 1.38629 1.38629 + 0.22977 3.95124 1.68173 1.46634 0.26236 0.00000 * + 1 0.96677 1.92013 1.91053 1.12362 1 a - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04726 3.76874 3.76874 1.46634 0.26236 1.55497 0.23724 + 2 2.36920 2.17182 2.47016 0.34545 2 t - - - + 1.83446 0.84257 1.83446 1.38629 + 0.42541 1.12882 3.76874 2.03997 0.13930 0.54886 0.86182 + 3 1.16410 2.43420 0.71774 2.18679 11 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 + 4 2.00446 2.13960 0.87914 1.10134 12 g - 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