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annotate test-data/files/input.merge.3.fas @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
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2 ---------------------------------TTATCAGAAGG----------------
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3 AGCCACCCCACAAGATTTAAAC--ACCATGCTACACCC-------AGTGGGGGGACATCA
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4 AGCAGCCA--
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5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
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6 -----------------------GTTTTCAGCATTATCAGAAGG----------------
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7 AGCCACCCCACAAGATTTAAAC--ACCATGCTAAACAC-------AGTGGGGGGACAT--
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8 ----------
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9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
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10 -------CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGG----------------
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11 AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA-------------------------
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12 ----------
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13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
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14 -------TGT-------------AACACCTCAGTCATTA------CACAGGCCTGTCCAA
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15 AGGTATCCTTTGAGCCAATTCC--CATACATTATTGTG----------------------
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16 ----------
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17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
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18 -------ATG-------------TATG---------------------GGAATTGGCTGA
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19 AAGGATACCTTTGGACAGGCCT--GAGTAATGACTGAGGTGTTACAA---------CTTG
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20 TC--------
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21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
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22 -------AA--------------GCTTGTGTAATTGTTAATTTC---TCTGTCCCACTCC
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23 ATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG--------------------------
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24 AG--------
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25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
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26 -------AA--------------AATTTCAAA----------------------------
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27 AATTGGGCCTGAAAATCCATAC--AATACTCCAGTATT-TGCCATAAAGAAAAAAGACAG
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28 TA--------
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29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
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30 -------GC--------------CTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAG
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31 AGTGGAGGTTTGAGAGCCACCT--AGCAATTCA---------------------------
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32 ----------
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33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
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34 -------GTA-------------CTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCAC
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35 CATTATCGTTTGAGACCCACCT--CCCAACCC----------------------------
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36 ----------
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37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
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38 -----------------------------GGT----------------------------
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39 GATATGGGCTGATGTACCATTT--GCCCCTGGATGTTC-TGCACTATAGGGTAATTTTGG
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40 CTGACCTGAT
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41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
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42 -------ATAGAG----------CTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAG
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43 GGGACGTTGCCAAAGAGTGACC--TG--------------------------AGG-----
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44 ----------
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45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
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46 -------------------------------------------TTTTTCAGTTCGCTTAG
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47 ATGAAGACTTCAGGCAGTATAC--TGCATTTACCATACCTAGTATAAACAATGAG-----
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48 ----------
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49 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
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50 ATAACCACAGAA-----------------AGCATAGTAATATGG----------------
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51 GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA---------------GGAAACAT--
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52 ----------
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53 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
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54 ---------------GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATAC
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55 AAGATAATAGTGACATAAAAGTAGT-----------------------------------
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56 ----------------------
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57 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
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58 ---------------------------------GGAAAGGTGAAGGGGCAGTAGTAATAC
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59 AAGATAATAGTGACATAACAGTAGTG----------------------------------
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60 -----CGAAGAAGAAAAGCAAA
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61 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
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62 --------------------------------------TTTTATGGTTCATAATCCACTC
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63 CATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT----------
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64 ----------------------
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65 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
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66 -------------GAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAATAACC
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67 AGTACATGGAGTGTATTATGACC-------------------------------------
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68 ----------------------
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69 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
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70 ---------------------------------------------CTCTAGTGTCCATTC
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71 ATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCTCTCCT-----
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72 ----------------------
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73 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
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74 TGATTTGTTGTGTCAGTTAGGGTGACAACT--------TTTTGTGTTCCTCTATTAGTAA
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75 CATATCCTGCTTTTCCTA------------------------------------------
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76 ----------------------
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77 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
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78 ----------------------------------GAAGTCTTGAGTTCTCTTATTAA---
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79 ---------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTC----
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80 ----------------------
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81 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
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82 ------------------------------------------------------------
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83 ----------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTT-
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84 -ATGGCAAATACTGGAGTATTG
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85 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
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86 ---------------GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACA
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87 GACATACAAACTAAAGAATTACAA------------------------------------
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88 ---------------------A
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89 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
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90 ------------------------------------------------------------
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91 ------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTC
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92 CTTGCCACACAATCATCACCTG