diff test-data/files/input.merge.3.fas @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/input.merge.3.fas	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,92 @@
+>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
+---------------------------------TTATCAGAAGG----------------
+AGCCACCCCACAAGATTTAAAC--ACCATGCTACACCC-------AGTGGGGGGACATCA
+AGCAGCCA--
+>K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
+-----------------------GTTTTCAGCATTATCAGAAGG----------------
+AGCCACCCCACAAGATTTAAAC--ACCATGCTAAACAC-------AGTGGGGGGACAT--
+----------
+>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
+-------CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGG----------------
+AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA-------------------------
+----------
+>K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
+-------TGT-------------AACACCTCAGTCATTA------CACAGGCCTGTCCAA
+AGGTATCCTTTGAGCCAATTCC--CATACATTATTGTG----------------------
+----------
+>K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
+-------ATG-------------TATG---------------------GGAATTGGCTGA
+AAGGATACCTTTGGACAGGCCT--GAGTAATGACTGAGGTGTTACAA---------CTTG
+TC--------
+>K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
+-------AA--------------GCTTGTGTAATTGTTAATTTC---TCTGTCCCACTCC
+ATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG--------------------------
+AG--------
+>K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
+-------AA--------------AATTTCAAA----------------------------
+AATTGGGCCTGAAAATCCATAC--AATACTCCAGTATT-TGCCATAAAGAAAAAAGACAG
+TA--------
+>K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
+-------GC--------------CTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAG
+AGTGGAGGTTTGAGAGCCACCT--AGCAATTCA---------------------------
+----------
+>K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
+-------GTA-------------CTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCAC
+CATTATCGTTTGAGACCCACCT--CCCAACCC----------------------------
+----------
+>K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
+-----------------------------GGT----------------------------
+GATATGGGCTGATGTACCATTT--GCCCCTGGATGTTC-TGCACTATAGGGTAATTTTGG
+CTGACCTGAT
+>K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
+-------ATAGAG----------CTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAG
+GGGACGTTGCCAAAGAGTGACC--TG--------------------------AGG-----
+----------
+>K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
+-------------------------------------------TTTTTCAGTTCGCTTAG
+ATGAAGACTTCAGGCAGTATAC--TGCATTTACCATACCTAGTATAAACAATGAG-----
+----------
+>K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
+ATAACCACAGAA-----------------AGCATAGTAATATGG----------------
+GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA---------------GGAAACAT--
+----------
+>K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
+---------------GACCAGCAAAGCACCTCTGGAAAGGTGAAGGGGCAGTAGTAATAC
+AAGATAATAGTGACATAAAAGTAGT-----------------------------------
+----------------------
+>K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
+---------------------------------GGAAAGGTGAAGGGGCAGTAGTAATAC
+AAGATAATAGTGACATAACAGTAGTG----------------------------------
+-----CGAAGAAGAAAAGCAAA
+>K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
+--------------------------------------TTTTATGGTTCATAATCCACTC
+CATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT----------
+----------------------
+>K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
+-------------GAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAATAACC
+AGTACATGGAGTGTATTATGACC-------------------------------------
+----------------------
+>K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
+---------------------------------------------CTCTAGTGTCCATTC
+ATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCTCTCCT-----
+----------------------
+>K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
+TGATTTGTTGTGTCAGTTAGGGTGACAACT--------TTTTGTGTTCCTCTATTAGTAA
+CATATCCTGCTTTTCCTA------------------------------------------
+----------------------
+>K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
+----------------------------------GAAGTCTTGAGTTCTCTTATTAA---
+---------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTC----
+----------------------
+>K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
+------------------------------------------------------------
+----------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCTTTTTTCTTT-
+-ATGGCAAATACTGGAGTATTG
+>K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
+---------------GGGGGGAACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACA
+GACATACAAACTAAAGAATTACAA------------------------------------
+---------------------A
+>K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
+------------------------------------------------------------
+------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTCATCCTGTCTC
+CTTGCCACACAATCATCACCTG