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annotate test-data/files/clsReps.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0
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2 --------------------------CAGAAGTGATACCCATGTTTTCAG----------
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3 ---------------------CATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA
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4 TGCTAAA-----------------------------------------------------
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5 ------------------------------------------------------------
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6 ------------------------------------------------------------
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7 -----
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8 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1
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9 ------------------------------------------------------------
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10 ------------------------------------------------------------
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11 ------------------------------------------------------GAAGA-
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12 ---------------AGCGGAGACAGCGACGAAGAGCTCA--------------------
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13 -------------TCAGAACAGTCAGACTCATCAAGCTTCTCAATCAAATCAG-------
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14 -----
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15 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2
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16 AT---C--CTCATGCATCTGTTCTACCATGTCATTTTTCCA-------------------
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17 --------------------------------------CATGTTAAAATTTTCTGTCACA
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18 TTTACCAATACT------------------------------------------------
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19 ------------------------------------------------------------
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20 ------------------------------------------------------------
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21 -----
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22 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3
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23 ----------------------------------------------CTATGTTTACTTCT
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24 A----------------------ATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAA
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25 CTCAGTCTTCTGATTTGT------------------------------------------
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26 ------------------------------------------------------------
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27 ------------------------------------------------------------
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28 -----
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29 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4
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30 ------------------------------------------------------------
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31 ----------------------CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTA
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32 AGCCATGGAGCCAAATCCTAGGAAAATGT-------------------------------
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33 ------------------------------------------------------------
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34 ------------------------------------------------------------
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35 --CTA
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36 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5
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37 -------------------------------------CTACTATTGCTACTAATGGTA--
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38 --------------------------------TAGGTTGCGTTACATGTAC-------TA
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39 CTTACTGCTTTGAT--------------------------AGAGAAGCTTGATG------
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40 ------------------------------------------------------------
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41 ------------------------------------------------------------
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42 -----
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43 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6
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44 ----------------------------------TCTTTGCCTTGGTTGGAGCAACTCCT
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45 AA------------------------------TGGTTGAATTTTTACTACTTTATATTTA
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46 TATAATTCCCTTCT----------------------------------------------
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47 ------------------------------------------------------------
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48 ------------------------------------------------------------
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49 -----
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50 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7
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51 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC
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52 TAGGATCAAC--------------------------------------------------
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53 ------------------------------------------------------------
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54 ------------------------------------------------------------
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55 ------------------------------------------------------------
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56 -----
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57 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8
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58 ------------------------------------------------------------
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59 ------------------------------------------------------------
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60 ------------------------------------------ACAACGGAATTGGAGGA-
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61 -------------------AATGAACCAGTAGATAAATTA--------------------
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62 GTCAGTGCTGGAATCAGGAAAGTACTATTTTT----------------------------
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63 -----
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64 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9
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65 ------------------------------------------------------------
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66 --------------------------------------------AGGATTT-------TA
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67 CATAATTGCCTTAC--------------------------TTAAATCCCTGGGTAAATCT
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68 GACTTGCCCAA-TTCAATTTCCCCACTA--------------------------------
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69 ------------------------------------------------------------
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70 -----
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71 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10
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72 ------------------------------------------------------------
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73 -----------------------TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA
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74 TGCTACACCC--------------------------------------------------
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75 -------------------AGTGGGGGGACATCAAGCAGCCA------------------
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76 ------------------------------------------------------------
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77 -----
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78 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11
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79 -------------------------------CTACCTCTTCTTCTGCTAGACTGCCATTT
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80 AACA----------------------GCAGTTGAGTTGATACTACTGGCCT-------AA
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81 TTCCATGTGT--------------------------------------------------
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82 ------------------------------------------------------------
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83 ------------------------------------------------------------
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84 -----
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85 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12
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86 ------------------------------------------------------------
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87 ---------------------TTCTCTGAAATCTACTAATTTTCTCCATTT-------AG
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88 TACTGTCTTTTTTCTTTATGGCAAATACTGGAGTAT------------------------
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89 ------------------------------------------------------------
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90 ------------------------------------------------------------
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91 ---TG
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92 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13
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93 --------------------------------------------TGCCAAGGATCCGTTC
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94 ACT--------------------------AATCGAATGGATCTGTCTCTGTCTCTCTCTC
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95 CACCTTCTTCTTCTATTCCT----------------------------------------
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96 ------------------------------------------------------------
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97 ------------------------------------------------------------
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98 -----
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99 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14
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100 -------------------------CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTT
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101 GC----------------------------------CCATACTATATGTTT-------TA
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102 ATTTATATTTTTTCTT--------------------------------------------
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103 ------------------------------------------------------------
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104 ------------------------------------------------------------
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105 -----
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106 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15
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107 ---------------------------------------------GCTGCTCCCACCCT-
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108 ------------------------ATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCT
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109 TACAGTAGGCCATCCAATCA----------------------------------------
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110 ------------------------------------------------------------
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111 ------------------------------------------------------------
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112 -----
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113 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16
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114 ------------------------------------------------------------
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115 --------------------------------------------------------ACAG
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116 TAGAAAAATTCCCCTCCACCA------------------TTAAAACTGTGGTTACAATAT
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117 CTGGGTCCCC---------TCCTGAGGATTGGT---------------------------
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118 ------------------------------------------------------------
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119 -----
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120 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17
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121 ------------------------------------------------------------
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122 ------------------------------------------------------------
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123 ------------------------------------------------------------
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124 --------------AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTA
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125 GACAGGATGAGGATTAGAACA---------------------------------------
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126 --TGG
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127 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18
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128 ------------------------------------------------------------
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129 ----------------------------------------GATCCTGCATA-------TA
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130 AGCAGCAGCTTTTT------------------------------------------GCCT
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131 TTACTGGTTCT-CTCTGGTTAGACCAGATCTGA-GCCTGGG-------------------
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132 ------------------------------------------------------------
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133 -----
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134 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19
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135 ----------GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCG--
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136 -------------------------------------------------TTTGAGACCCA
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137 CCTCCCAACCC-------------------------------------------------
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138 ------------------------------------------------------------
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139 ------------------------------------------------------------
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140 -----
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141 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20
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142 ------------------------------------------------------------
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143 ------------------------------------------------------------
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144 -----------------------------------CAGAGGAGGTCTCTCGACGCAGGAC
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145 TCGGCTTGCTG-----AAGGGCGCACGGCAAGAGGCGAGGGGCGGCGA------------
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146 ------------------------------------------------------------
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147 ---CT
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148 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21
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149 ------------------------------------GTCTGGGGCATCAAGCAGCTCCAG
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150 GC--------------------------AAGAATGCTGGCTGTGGAAAGATACCTAAAGG
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151 ATCAACAGCTCC------------------------------------------------
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152 ------------------------------------------------------------
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153 ------------------------------------------------------------
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154 -----
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155 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22
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156 ------------------------------------------TTTTTCAG----------
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157 --------------------------------TTCGCTTAGATGAAGACTTCAGGCAGTA
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158 TACTGCATTTACCATAC-------------------------------------------
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159 -------------------CTAGTATAAACAATGAG------------------------
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160 ------------------------------------------------------------
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161 -----
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162 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23
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163 ------------------------------------------------------------
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164 ------------------------------------------------------------
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165 ------------------------------------------------------------
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166 ----------------------ACAGCGACGAAGAGCTCA--------------------
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167 -------------TCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAT
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168 TACAT
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169 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24
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170 GGGGGG------------------------------------------------------
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171 ------------------------------------------------------------
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172 ------------------------------------------------------------
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173 ----------------AACAGTGCAGGGGAAAGAATAGTA------------------GA
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174 CATAATAGCAACAGACATACAAACTAAAGAATTACAA-----------------------
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175 ----A
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176 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25
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177 ------------------------------------------------------------
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178 ----------------------------------------------TGCTCTGAAGAAAA
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179 TTCCCTGGCCTTCCCTTGTAGTAAGGC-CATAT-CTTCCCTAAAAAATTAGCCTGTCT--
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180 ------------------------------------------------------------
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181 ------------------------------------------------------------
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182 -----
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183 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26
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184 ------------------------------------------------------------
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185 ---------------------------------------GGCTAATTCACTCCCAACGAA
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186 GACAAGATATCCTTGATCT-----------------------------------------
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187 ----------------GTGGATGTACCACCCACAAGGCTACTTCCC--------------
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188 ------------------------------------------------------------
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189 -----
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190 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
191 ----------------------------------TGATTTGTTGTGTCAG----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
192 --------------------TTAGGGTGACAACTTTTTGTGTTCCTCTATT-------AG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
193 TAACATATCCTGCTTTTCCTA---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
194 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
195 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
196 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
197 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
198 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
199 ---------------------------------------------------------TAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
200 CGCCACCTTTGCCTAGTGTTACGAAAC---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
201 -------------------TGCCAGAGGATAGATGGAACAA-----------------G-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
202 -----CCCCAGAAGACGAAGGG--------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
203 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
204 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
205 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
206 -----------------GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
207 ATCCTTGGCACTTATCTGGGACGATCT---------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
208 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
209 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
210 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
211 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
212 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
213 -------------------------------TTCTGGGAAGTT-----------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
214 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
215 -------------------CAATTAGGAATACCACATCCC--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
216 -------GCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGG----------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
217 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
218 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
219 ------------------------------CTCTAGTGTCCATTCATTGTGTGGCTCCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
220 CT--------------------------GTGGCCCTTGGTCTTCTTGGGCT-------TG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
221 TTCCATCTCTCC------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
222 ---------------------------------T--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
223 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
224 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
225 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
226 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
227 -------------A--------------------GCCATTGCTCTCCAATT-------AC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
228 TGTGATATTTCTCATGTTCATCTTGG----------GCCTTAACTATTCCATCTAAAAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
229 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
230 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
231 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
232 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
233 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
234 ---------------------------TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
235 TACAGTAGGCCATCCAATCAC---------------ACTACATATTGACCAC--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
236 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
237 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
238 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
239 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
240 -------------------------TCGGAGTCATTGTTGCTATTACCACCATCTTTTGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
241 TC------------------------------ATAGCAGCCCTGTAATATTTGATTAACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
242 TCTAA-------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
243 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
244 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
245 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
246 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
247 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
248 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
249 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
250 ----------------------ATAACCACAGAAAGCATA--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
251 -------GTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACAT-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
252 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
253 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
254 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
255 --------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCT-------CA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
256 TCCTGTCTCCTTGCCACACAATCATCACCTG-----------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
257 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
258 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
259 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
260 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
261 ACCCAT--CTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
262 --------------------------------CGAATAGCTCTACA--------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
263 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
264 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
265 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
266 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
267 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
268 ----------------------------------GAGGGGGAGTTGTTGTCTGTACCCCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
269 GACCTG-------AAGCTCTCTTCTTGTGGGGCTGTTGGCTCTGGTCTGCT---------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
270 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
271 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
272 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
273 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
274 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
275 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
276 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
277 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
278 -------------------TATAAAGACGCAGAAGTTATT--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
279 -------CCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTCAAATTAGCAG----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
280 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
281 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
282 ----------------TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCC--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
283 -------------------------------------------------TTTGAGCCAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
284 TCCCATACATTATTGTG-------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
285 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
286 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
287 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
288 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
289 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
290 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
291 ------------------------------------------------------GGAAA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
292 -------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
293 GATAATAGTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA-------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
294 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
295 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
296 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
297 --------------------------------AAGTGCAAGCAATCTGATT-------CA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
298 CCCGATTTCTTCCAATTATGA---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
299 --------------TGACAGGTGTAGGTCCTACTAATACAGT------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
300 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
301 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
302 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
303 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
304 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
305 ----------------------------------------TATGGTACCAGTTAGAGAA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
306 ---------------AGAACCCCTAGTAGGAGCAGAAACCT-------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
307 -------TCTATGTAGATGGGGCAGCTAACAG----------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
308 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
309 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
310 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
311 --------------------------------------ATTGTACACATTT-------AG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
312 AATGAAAAGTTATCCTGGTAG------------------CAGTTCATGTAGCCAGTGGA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
313 -------------------TATATAGAAGCAGA---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
314 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
315 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
316 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
317 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
318 ----------------------------------------------------------TG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
319 ACAGAAACCT------------------------------AGTTGGTCCAAAATGCGAAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
320 CCAGATTGTAA----GACAATTTTAAAAGCATTGGGACCA--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
321 -------GC---------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
322 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
323 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
324 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
325 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
326 -----------------------------------------GGTGATATGGGCTGATGTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
327 CCATTTGCCCC----TGGATGTTCTGCACTATAGGGTAATT-----------------TT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
328 GGCTGACCTGAT------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
329 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
330 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
331 -----------GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGG--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
332 -------------------------------------------------TTTGAGAGCCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
333 CCTAGCAATTCA------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
334 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
335 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
336 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
337 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
338 -------------------------------------------------------TCCTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
339 AC------------------------------TCCAATACTGTAGGAGATTCCACCAATA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
340 TTTGAGGGCTTCCCACCCCCTGC-------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
341 -------------------GTCCCAGAAGTT-----------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
342 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
343 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
344 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
345 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
346 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
347 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
348 -------------------ATTTTAAAAGCATTGGGACCAGCGGCTACACTAG---AAGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
349 AATGATGACAGCATGTCAGGGAGTAGGATGAC----------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
350 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
351 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
352 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
353 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
354 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
355 ----------------CAACCTATACCAATAGTAGCAATA--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
356 -------GTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGAGTGGTC---------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
357 ---CA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
358 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
359 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
360 --------CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
361 GACAAGATATCCTTGATC------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
362 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
363 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
364 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
365 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
366 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
367 -------------------------CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
368 ATCAGTGGGTTCCCTAGTTA----------------GCCAGAGAGCTCCCA---------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
369 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
370 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
371 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
372 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
373 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
374 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
375 ---------------------ACAGT---------AATTGGAGAGCAATGGCTAGTGATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
376 TTAACCTGCCA--------CCTGTAGTAGCAAAAGAAATAGTAGCCCG------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
377 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
378 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
379 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
380 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
381 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
382 -------AATTT----------------------------ATCAAGAGCCATTTAAAAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
383 CTGAAAACAGG----AAAATATGCAAGAATGAGGGGTGCC--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
384 CACACTAAT---------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
385 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
386 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
387 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
388 ------------------------------------------TTAAAATTTTCTGTCACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
389 TTTACCAATACTACTTCTTGTGGGTT----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
390 ---------------GGGGTCTGTGGGTACACAGGCATGTG-------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
391 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
392 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
393 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
394 -------------------------TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
395 --------------------------------CGCATAGCTCTACAAGCTC-------CT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
396 TGTACTACTTCAATAA--------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
397 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
398 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
399 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
400 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
401 -----------------------------------------TGTGTTCAGCTGTACTATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
402 ATGGTT-----------------ATAGCATTTTCCGTGAAATTGACAGATCTAATTACTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
403 CCTCTTCT----------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
404 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
405 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
406 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
407 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
408 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
409 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
410 ---GATGGTTTT----------------------------ATAGACATCACTATGAAAGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
411 CCTCATCCAAG----AAAAAGTTCAGAAGTA-------CA--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
412 CATCCCACTAGG------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
413 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
414 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
415 --------------------TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
416 A----------------------ATTCTGAAACTGGATAAACAGCAGTTGTT--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
417 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
418 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
419 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
420 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
421 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
422 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
423 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
424 ----------------------------------------AGTTCATGTATCCAGTGGA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
425 -------------------TATATAGAAGCAGAAGTTATT--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
426 -------CCAGCAGAAACAGGGGCTGAAACAGCATAT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
427 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
428 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
429 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
430 ---------------GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTT---------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
431 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
432 --------------AGAAACATCAGAAGGCTGTAGACAAATACTGGGA------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
433 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
434 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
435 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
436 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
437 -----------------------AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
438 CTCCAGTATTTGCCATAAAGAAAAAAGACAGTA---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
439 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
440 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
441 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
442 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
443 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
444 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
445 ---AGTAAGT------------------------------AGTACCTGTAAC--GCAA--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
446 -------------------CCTATACCAATAGTAGCAATA--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
447 -------GTAGCATTAGTAGTAGCACTAATAAT---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
448 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
449 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
450 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
451 -----------------------------CG------------AGCAAGCTTCACAGGAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
452 TTAAAAAATTGGATGACAGAA---------------ACCTTGTTGGTCCAAAATGCGAAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
453 CCAGAT------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
454 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
455 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
456 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
457 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
458 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
459 ------------------------------------GACCAGCAAAGCACCTCTGGAAA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
460 -------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
461 GATAATAGTGACATAAAAGTAGT-------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
462 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
463 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
464 C------------------------------------CCCATATTACTATGCTTTCTGTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
465 GT------------------------------------------TAATTTTTGCACTGCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
466 TCTGTTAATTGTTTTACATCATTAGTGT--------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
467 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
468 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
469 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
470 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
471 -----------------------------------------------CGGGCACACACT-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
472 ------------------------ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
473 AGCAGTGGGTTCCCTAGTTA----------------GC----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
474 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
475 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
476 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
477 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
478 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
479 --------------CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
480 TGTGGTAAGTCCCCACCTCGACAG------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
481 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
482 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
483 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
484 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
485 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
486 ---------------TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
487 TCTCATTTTTCTGCCCGTTCTAG-------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
488 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
489 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
490 ---CT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
491 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
492 --------------------------------------------CTTTATATTTTTTCTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
493 ACCCCC--------------------------TGGCCTTAACCGAATTTTTTCCCATCGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
494 TCTAATTCTCCCCCGCTTAA----------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
495 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
496 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
497 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
498 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
499 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
500 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
501 -----------------------------TAG--GAACCAAAGAAAGATAGTTAAGTGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
502 TCAATTGTGGC-ACAGAAGGGCACACAGCCAGAAATTGCAGG------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
503 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
504 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
505 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
506 ----------------------------------TCTACATAGTCTCTAAAGGGTTCCTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
507 TGGTCCT-------TGTCTTATGTCCAGAATGCTGGTAGGGCTATACATTC---------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
508 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
509 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
510 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
511 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
512 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
513 ----------------------------------ATAGAGCTTCCTTTAGTTGCCCCCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
514 ATCTTTATTGTG-AC---------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
515 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
516 ----------------GAGGGGACGTTGCCAAAGAGTGACCTGAGG--------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
517 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
518 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
519 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
520 G---------------------------AAGTCTTGAGTTCTCTTATTAA----------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
521 --------------------GTTCTCTGAAATCTACTAATTTTCTCCATTT-------AG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
522 TACTGTCTTTTTTC----------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
523 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
524 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
525 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
526 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
527 TTTGA-------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
528 -----T----------TGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
529 CCTAATGCATATTGTGAGTC----------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
530 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
531 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
532 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
533 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
534 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
535 --------------------------------------ACTTT---ATATT-------TA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
536 TATAATTCACTTCTCCAATTGTCCCTCATCTCTCCT------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
537 -----------CCTCCAGGTCTGAAGATCTCGG---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
538 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
539 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
540 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
541 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
542 ------------------AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
543 GCCAGTAGATCCTAGACTATAGCCCTGG--------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
544 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
545 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
546 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
547 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
548 -------------------------------------CTTCTTCTGTTAGTGGTATTACT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
549 TCT--------------------GTTAGTGCTTTGGTACCTCTAAGGAGTT-------TA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
550 CATAATTGCCTTAC----------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
551 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
552 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
553 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
554 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
555 ----------------------------------AAGCTTGTGTAATTGTTAATTTCTCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
556 GTCCCACT------------------------CCATCCAGGTCGTGTGATTCCAACTCTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
557 TTCCAGAG----------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
558 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
559 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
560 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
561 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
562 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
563 ---------------------TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
564 ACTAA-------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
565 --------------AAGGGTCTGAGGGATCTCTAGTTACC--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
566 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
567 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
568 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
569 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
570 ----------GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTT--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
571 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
572 --------------AGAGGAGCTTAAGAATGAAGCTGTTAGA------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
573 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
574 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
575 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
576 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
577 ----------------------------------------------CAGATACCTAAATG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
578 ATCAACAGCTCCTGGGGATTTGGGGT---------TGCTCTGGAAAACTCATTTGCACCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
579 CTGCT-------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
580 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
581 -----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
582 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
583 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
584 --------------------AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
585 GGAAGCAACCACCACTCTATTTTGTGCATC------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
586 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
587 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
588 -----