Mercurial > repos > dave > pipelign
diff test-data/files/clsReps.aln @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/clsReps.aln Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,588 @@ +>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0 +--------------------------CAGAAGTGATACCCATGTTTTCAG---------- +---------------------CATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA +TGCTAAA----------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------GAAGA- +---------------AGCGGAGACAGCGACGAAGAGCTCA-------------------- +-------------TCAGAACAGTCAGACTCATCAAGCTTCTCAATCAAATCAG------- +----- +>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2 +AT---C--CTCATGCATCTGTTCTACCATGTCATTTTTCCA------------------- +--------------------------------------CATGTTAAAATTTTCTGTCACA +TTTACCAATACT------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3 +----------------------------------------------CTATGTTTACTTCT +A----------------------ATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAA +CTCAGTCTTCTGATTTGT------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4 +------------------------------------------------------------ +----------------------CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTA +AGCCATGGAGCCAAATCCTAGGAAAATGT------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +--CTA +>K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5 +-------------------------------------CTACTATTGCTACTAATGGTA-- +--------------------------------TAGGTTGCGTTACATGTAC-------TA +CTTACTGCTTTGAT--------------------------AGAGAAGCTTGATG------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6 +----------------------------------TCTTTGCCTTGGTTGGAGCAACTCCT +AA------------------------------TGGTTGAATTTTTACTACTTTATATTTA +TATAATTCCCTTCT---------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7 +AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC +TAGGATCAAC-------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------ACAACGGAATTGGAGGA- +-------------------AATGAACCAGTAGATAAATTA-------------------- +GTCAGTGCTGGAATCAGGAAAGTACTATTTTT---------------------------- +----- +>K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9 +------------------------------------------------------------ +--------------------------------------------AGGATTT-------TA +CATAATTGCCTTAC--------------------------TTAAATCCCTGGGTAAATCT +GACTTGCCCAA-TTCAATTTCCCCACTA-------------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10 +------------------------------------------------------------ +-----------------------TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA +TGCTACACCC-------------------------------------------------- +-------------------AGTGGGGGGACATCAAGCAGCCA------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11 +-------------------------------CTACCTCTTCTTCTGCTAGACTGCCATTT +AACA----------------------GCAGTTGAGTTGATACTACTGGCCT-------AA +TTCCATGTGT-------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12 +------------------------------------------------------------ +---------------------TTCTCTGAAATCTACTAATTTTCTCCATTT-------AG +TACTGTCTTTTTTCTTTATGGCAAATACTGGAGTAT------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +---TG +>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13 +--------------------------------------------TGCCAAGGATCCGTTC +ACT--------------------------AATCGAATGGATCTGTCTCTGTCTCTCTCTC +CACCTTCTTCTTCTATTCCT---------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14 +-------------------------CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTT +GC----------------------------------CCATACTATATGTTT-------TA +ATTTATATTTTTTCTT-------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15 +---------------------------------------------GCTGCTCCCACCCT- +------------------------ATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCT +TACAGTAGGCCATCCAATCA---------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16 +------------------------------------------------------------ +--------------------------------------------------------ACAG +TAGAAAAATTCCCCTCCACCA------------------TTAAAACTGTGGTTACAATAT +CTGGGTCCCC---------TCCTGAGGATTGGT--------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +--------------AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTA +GACAGGATGAGGATTAGAACA--------------------------------------- +--TGG +>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18 +------------------------------------------------------------ +----------------------------------------GATCCTGCATA-------TA +AGCAGCAGCTTTTT------------------------------------------GCCT +TTACTGGTTCT-CTCTGGTTAGACCAGATCTGA-GCCTGGG------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19 +----------GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCG-- +-------------------------------------------------TTTGAGACCCA +CCTCCCAACCC------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20 +------------------------------------------------------------ +------------------------------------------------------------ +-----------------------------------CAGAGGAGGTCTCTCGACGCAGGAC +TCGGCTTGCTG-----AAGGGCGCACGGCAAGAGGCGAGGGGCGGCGA------------ +------------------------------------------------------------ +---CT +>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21 +------------------------------------GTCTGGGGCATCAAGCAGCTCCAG +GC--------------------------AAGAATGCTGGCTGTGGAAAGATACCTAAAGG +ATCAACAGCTCC------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22 +------------------------------------------TTTTTCAG---------- +--------------------------------TTCGCTTAGATGAAGACTTCAGGCAGTA +TACTGCATTTACCATAC------------------------------------------- +-------------------CTAGTATAAACAATGAG------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----------------------ACAGCGACGAAGAGCTCA-------------------- +-------------TCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAT +TACAT +>K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24 +GGGGGG------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----------------AACAGTGCAGGGGAAAGAATAGTA------------------GA +CATAATAGCAACAGACATACAAACTAAAGAATTACAA----------------------- +----A +>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25 +------------------------------------------------------------ +----------------------------------------------TGCTCTGAAGAAAA +TTCCCTGGCCTTCCCTTGTAGTAAGGC-CATAT-CTTCCCTAAAAAATTAGCCTGTCT-- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26 +------------------------------------------------------------ +---------------------------------------GGCTAATTCACTCCCAACGAA +GACAAGATATCCTTGATCT----------------------------------------- +----------------GTGGATGTACCACCCACAAGGCTACTTCCC-------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27 +----------------------------------TGATTTGTTGTGTCAG---------- +--------------------TTAGGGTGACAACTTTTTGTGTTCCTCTATT-------AG +TAACATATCCTGCTTTTCCTA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28 +------------------------------------------------------------ +---------------------------------------------------------TAA +CGCCACCTTTGCCTAGTGTTACGAAAC--------------------------------- +-------------------TGCCAGAGGATAGATGGAACAA-----------------G- +-----CCCCAGAAGACGAAGGG-------------------------------------- +----- +>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29 +------------------------------------------------------------ +-----------------GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGG +ATCCTTGGCACTTATCTGGGACGATCT--------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30 +------------------------------------------------------------ +-------------------------------TTCTGGGAAGTT----------------- +------------------------------------------------------------ +-------------------CAATTAGGAATACCACATCCC-------------------- +-------GCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGG---------------- +----- +>K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31 +------------------------------CTCTAGTGTCCATTCATTGTGTGGCTCCCT +CT--------------------------GTGGCCCTTGGTCTTCTTGGGCT-------TG +TTCCATCTCTCC------------------------------------------------ +---------------------------------T-------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32 +------------------------------------------------------------ +-------------A--------------------GCCATTGCTCTCCAATT-------AC +TGTGATATTTCTCATGTTCATCTTGG----------GCCTTAACTATTCCATCTAAAAAT +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33 +------------------------------------------------------------ +---------------------------TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCT +TACAGTAGGCCATCCAATCAC---------------ACTACATATTGACCAC-------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34 +-------------------------TCGGAGTCATTGTTGCTATTACCACCATCTTTTGT +TC------------------------------ATAGCAGCCCTGTAATATTTGATTAACA +TCTAA------------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----------------------ATAACCACAGAAAGCATA-------------------- +-------GTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACAT- +----- +>K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36 +------------------------------------------------------------ +--------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCT-------CA +TCCTGTCTCCTTGCCACACAATCATCACCTG----------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37 +ACCCAT--CTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG-- +--------------------------------CGAATAGCTCTACA-------------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38 +----------------------------------GAGGGGGAGTTGTTGTCTGTACCCCA +GACCTG-------AAGCTCTCTTCTTGTGGGGCTGTTGGCTCTGGTCTGCT--------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +-------------------TATAAAGACGCAGAAGTTATT-------------------- +-------CCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTCAAATTAGCAG---- +----- +>K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40 +----------------TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCC-- +-------------------------------------------------TTTGAGCCAAT +TCCCATACATTATTGTG------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------GGAAA- +-------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA +GATAATAGTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA------------------- +----- +>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42 +------------------------------------------------------------ +--------------------------------AAGTGCAAGCAATCTGATT-------CA +CCCGATTTCTTCCAATTATGA--------------------------------------- +--------------TGACAGGTGTAGGTCCTACTAATACAGT------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43 +------------------------------------------------------------ +------------------------------------------------------------ +----------------------------------------TATGGTACCAGTTAGAGAA- +---------------AGAACCCCTAGTAGGAGCAGAAACCT------------------- +-------TCTATGTAGATGGGGCAGCTAACAG---------------------------- +----- +>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44 +------------------------------------------------------------ +--------------------------------------ATTGTACACATTT-------AG +AATGAAAAGTTATCCTGGTAG------------------CAGTTCATGTAGCCAGTGGA- +-------------------TATATAGAAGCAGA--------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45 +------------------------------------------------------------ +----------------------------------------------------------TG +ACAGAAACCT------------------------------AGTTGGTCCAAAATGCGAAC +CCAGATTGTAA----GACAATTTTAAAAGCATTGGGACCA-------------------- +-------GC--------------------------------------------------- +----- +>K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46 +------------------------------------------------------------ +------------------------------------------------------------ +-----------------------------------------GGTGATATGGGCTGATGTA +CCATTTGCCCC----TGGATGTTCTGCACTATAGGGTAATT-----------------TT +GGCTGACCTGAT------------------------------------------------ +----- +>K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47 +-----------GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGG-- +-------------------------------------------------TTTGAGAGCCA +CCTAGCAATTCA------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48 +-------------------------------------------------------TCCTG +AC------------------------------TCCAATACTGTAGGAGATTCCACCAATA +TTTGAGGGCTTCCCACCCCCTGC------------------------------------- +-------------------GTCCCAGAAGTT----------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +-------------------ATTTTAAAAGCATTGGGACCAGCGGCTACACTAG---AAGA +AATGATGACAGCATGTCAGGGAGTAGGATGAC---------------------------- +----- +>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----------------CAACCTATACCAATAGTAGCAATA-------------------- +-------GTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGAGTGGTC--------- +---CA +>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51 +------------------------------------------------------------ +--------CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAA +GACAAGATATCCTTGATC------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52 +------------------------------------------------------------ +-------------------------CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTA +ATCAGTGGGTTCCCTAGTTA----------------GCCAGAGAGCTCCCA--------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53 +------------------------------------------------------------ +------------------------------------------------------------ +---------------------ACAGT---------AATTGGAGAGCAATGGCTAGTGATT +TTAACCTGCCA--------CCTGTAGTAGCAAAAGAAATAGTAGCCCG------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54 +------------------------------------------------------------ +------------------------------------------------------------ +-------AATTT----------------------------ATCAAGAGCCATTTAAAAAT +CTGAAAACAGG----AAAATATGCAAGAATGAGGGGTGCC-------------------- +CACACTAAT--------------------------------------------------- +----- +>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55 +------------------------------------------------------------ +------------------------------------------TTAAAATTTTCTGTCACA +TTTACCAATACTACTTCTTGTGGGTT---------------------------------- +---------------GGGGTCTGTGGGTACACAGGCATGTG------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56 +-------------------------TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG-- +--------------------------------CGCATAGCTCTACAAGCTC-------CT +TGTACTACTTCAATAA-------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57 +-----------------------------------------TGTGTTCAGCTGTACTATT +ATGGTT-----------------ATAGCATTTTCCGTGAAATTGACAGATCTAATTACTA +CCTCTTCT---------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58 +------------------------------------------------------------ +------------------------------------------------------------ +---GATGGTTTT----------------------------ATAGACATCACTATGAAAGC +CCTCATCCAAG----AAAAAGTTCAGAAGTA-------CA-------------------- +CATCCCACTAGG------------------------------------------------ +----- +>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59 +--------------------TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCC +A----------------------ATTCTGAAACTGGATAAACAGCAGTTGTT-------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60 +------------------------------------------------------------ +------------------------------------------------------------ +----------------------------------------AGTTCATGTATCCAGTGGA- +-------------------TATATAGAAGCAGAAGTTATT-------------------- +-------CCAGCAGAAACAGGGGCTGAAACAGCATAT----------------------- +----- +>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61 +------------------------------------------------------------ +---------------GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTT--------- +------------------------------------------------------------ +--------------AGAAACATCAGAAGGCTGTAGACAAATACTGGGA------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62 +------------------------------------------------------------ +-----------------------AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATA +CTCCAGTATTTGCCATAAAGAAAAAAGACAGTA--------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63 +------------------------------------------------------------ +------------------------------------------------------------ +---AGTAAGT------------------------------AGTACCTGTAAC--GCAA-- +-------------------CCTATACCAATAGTAGCAATA-------------------- +-------GTAGCATTAGTAGTAGCACTAATAAT--------------------------- +----- +>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64 +------------------------------------------------------------ +-----------------------------CG------------AGCAAGCTTCACAGGAG +TTAAAAAATTGGATGACAGAA---------------ACCTTGTTGGTCCAAAATGCGAAC +CCAGAT------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------GACCAGCAAAGCACCTCTGGAAA- +-------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA +GATAATAGTGACATAAAAGTAGT------------------------------------- +----- +>K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66 +C------------------------------------CCCATATTACTATGCTTTCTGTG +GT------------------------------------------TAATTTTTGCACTGCC +TCTGTTAATTGTTTTACATCATTAGTGT-------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67 +-----------------------------------------------CGGGCACACACT- +------------------------ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTA +AGCAGTGGGTTCCCTAGTTA----------------GC---------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68 +------------------------------------------------------------ +--------------CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGG +TGTGGTAAGTCCCCACCTCGACAG------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69 +------------------------------------------------------------ +---------------TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATC +TCTCATTTTTCTGCCCGTTCTAG------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +---CT +>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70 +--------------------------------------------CTTTATATTTTTTCTT +ACCCCC--------------------------TGGCCTTAACCGAATTTTTTCCCATCGA +TCTAATTCTCCCCCGCTTAA---------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71 +------------------------------------------------------------ +------------------------------------------------------------ +-----------------------------TAG--GAACCAAAGAAAGATAGTTAAGTGTT +TCAATTGTGGC-ACAGAAGGGCACACAGCCAGAAATTGCAGG------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72 +----------------------------------TCTACATAGTCTCTAAAGGGTTCCTT +TGGTCCT-------TGTCTTATGTCCAGAATGCTGGTAGGGCTATACATTC--------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73 +----------------------------------ATAGAGCTTCCTTTAGTTGCCCCCCT +ATCTTTATTGTG-AC--------------------------------------------- +------------------------------------------------------------ +----------------GAGGGGACGTTGCCAAAGAGTGACCTGAGG-------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74 +G---------------------------AAGTCTTGAGTTCTCTTATTAA---------- +--------------------GTTCTCTGAAATCTACTAATTTTCTCCATTT-------AG +TACTGTCTTTTTTC---------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75 +TTTGA------------------------------------------------------- +-----T----------TGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATT +CCTAATGCATATTGTGAGTC---------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76 +------------------------------------------------------------ +--------------------------------------ACTTT---ATATT-------TA +TATAATTCACTTCTCCAATTGTCCCTCATCTCTCCT------------------------ +-----------CCTCCAGGTCTGAAGATCTCGG--------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77 +------------------------------------------------------------ +------------------AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTA +GCCAGTAGATCCTAGACTATAGCCCTGG-------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78 +-------------------------------------CTTCTTCTGTTAGTGGTATTACT +TCT--------------------GTTAGTGCTTTGGTACCTCTAAGGAGTT-------TA +CATAATTGCCTTAC---------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79 +----------------------------------AAGCTTGTGTAATTGTTAATTTCTCT +GTCCCACT------------------------CCATCCAGGTCGTGTGATTCCAACTCTG +TTCCAGAG---------------------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80 +------------------------------------------------------------ +---------------------TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTG +ACTAA------------------------------------------------------- +--------------AAGGGTCTGAGGGATCTCTAGTTACC-------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81 +------------------------------------------------------------ +----------GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTT-------- +------------------------------------------------------------ +--------------AGAGGAGCTTAAGAATGAAGCTGTTAGA------------------ +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82 +------------------------------------------------------------ +----------------------------------------------CAGATACCTAAATG +ATCAACAGCTCCTGGGGATTTGGGGT---------TGCTCTGGAAAACTCATTTGCACCC +CTGCT------------------------------------------------------- +------------------------------------------------------------ +----- +>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83 +------------------------------------------------------------ +--------------------AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCA +GGAAGCAACCACCACTCTATTTTGTGCATC------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +-----