Mercurial > repos > dave > pipelign
view test-data/files/clsReps.aln @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1_1_0 --------------------------CAGAAGTGATACCCATGTTTTCAG---------- ---------------------CATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA TGCTAAA----------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1_2_1 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------GAAGA- ---------------AGCGGAGACAGCGACGAAGAGCTCA-------------------- -------------TCAGAACAGTCAGACTCATCAAGCTTCTCAATCAAATCAG------- ----- >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1_3_2 AT---C--CTCATGCATCTGTTCTACCATGTCATTTTTCCA------------------- --------------------------------------CATGTTAAAATTTTCTGTCACA TTTACCAATACT------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1_1_3 ----------------------------------------------CTATGTTTACTTCT A----------------------ATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGTAA CTCAGTCTTCTGATTTGT------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1_2_4 ------------------------------------------------------------ ----------------------CCAAGTATCCCCATAAGTTTCATAGATATGATGCCCTA AGCCATGGAGCCAAATCCTAGGAAAATGT------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ --CTA >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1_1_5 -------------------------------------CTACTATTGCTACTAATGGTA-- --------------------------------TAGGTTGCGTTACATGTAC-------TA CTTACTGCTTTGAT--------------------------AGAGAAGCTTGATG------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1_1_6 ----------------------------------TCTTTGCCTTGGTTGGAGCAACTCCT AA------------------------------TGGTTGAATTTTTACTACTTTATATTTA TATAATTCCCTTCT---------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1_1_7 AATAGCAATTTGTACAAGCAGTTTTAGGCTGACTTCGTGGATGCTTCCAGGGCTCTCGTC TAGGATCAAC-------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1_2_8 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------ACAACGGAATTGGAGGA- -------------------AATGAACCAGTAGATAAATTA-------------------- GTCAGTGCTGGAATCAGGAAAGTACTATTTTT---------------------------- ----- >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1_1_9 ------------------------------------------------------------ --------------------------------------------AGGATTT-------TA CATAATTGCCTTAC--------------------------TTAAATCCCTGGGTAAATCT GACTTGCCCAA-TTCAATTTCCCCACTA-------------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1_2_10 ------------------------------------------------------------ -----------------------TTATCAGAAGGAGCCACCCCACAAGATTTAAACACCA TGCTACACCC-------------------------------------------------- -------------------AGTGGGGGGACATCAAGCAGCCA------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1_2_11 -------------------------------CTACCTCTTCTTCTGCTAGACTGCCATTT AACA----------------------GCAGTTGAGTTGATACTACTGGCCT-------AA TTCCATGTGT-------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1_1_12 ------------------------------------------------------------ ---------------------TTCTCTGAAATCTACTAATTTTCTCCATTT-------AG TACTGTCTTTTTTCTTTATGGCAAATACTGGAGTAT------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---TG >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1_1_13 --------------------------------------------TGCCAAGGATCCGTTC ACT--------------------------AATCGAATGGATCTGTCTCTGTCTCTCTCTC CACCTTCTTCTTCTATTCCT---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1_1_14 -------------------------CAGGATTAACTGCGAATCTTTCTAGCTCCCTTGTT GC----------------------------------CCATACTATATGTTT-------TA ATTTATATTTTTTCTT-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1_1_15 ---------------------------------------------GCTGCTCCCACCCT- ------------------------ATCTTGTGCTGGCTCAGCTCGTCTCATTGTTTCCCT TACAGTAGGCCATCCAATCA---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1_2_16 ------------------------------------------------------------ --------------------------------------------------------ACAG TAGAAAAATTCCCCTCCACCA------------------TTAAAACTGTGGTTACAATAT CTGGGTCCCC---------TCCTGAGGATTGGT--------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1_1_17 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------AGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAATTA GACAGGATGAGGATTAGAACA--------------------------------------- --TGG >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1_1_18 ------------------------------------------------------------ ----------------------------------------GATCCTGCATA-------TA AGCAGCAGCTTTTT------------------------------------------GCCT TTACTGGTTCT-CTCTGGTTAGACCAGATCTGA-GCCTGGG------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1_1_19 ----------GTACTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATCG-- -------------------------------------------------TTTGAGACCCA CCTCCCAACCC------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1_2_20 ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------CAGAGGAGGTCTCTCGACGCAGGAC TCGGCTTGCTG-----AAGGGCGCACGGCAAGAGGCGAGGGGCGGCGA------------ ------------------------------------------------------------ ---CT >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1_1_21 ------------------------------------GTCTGGGGCATCAAGCAGCTCCAG GC--------------------------AAGAATGCTGGCTGTGGAAAGATACCTAAAGG ATCAACAGCTCC------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1_1_22 ------------------------------------------TTTTTCAG---------- --------------------------------TTCGCTTAGATGAAGACTTCAGGCAGTA TACTGCATTTACCATAC------------------------------------------- -------------------CTAGTATAAACAATGAG------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1_1_23 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------ACAGCGACGAAGAGCTCA-------------------- -------------TCAGAACAGACAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAT TACAT >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1_1_24 GGGGGG------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------AACAGTGCAGGGGAAAGAATAGTA------------------GA CATAATAGCAACAGACATACAAACTAAAGAATTACAA----------------------- ----A >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1_1_25 ------------------------------------------------------------ ----------------------------------------------TGCTCTGAAGAAAA TTCCCTGGCCTTCCCTTGTAGTAAGGC-CATAT-CTTCCCTAAAAAATTAGCCTGTCT-- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1_1_26 ------------------------------------------------------------ ---------------------------------------GGCTAATTCACTCCCAACGAA GACAAGATATCCTTGATCT----------------------------------------- ----------------GTGGATGTACCACCCACAAGGCTACTTCCC-------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1_1_27 ----------------------------------TGATTTGTTGTGTCAG---------- --------------------TTAGGGTGACAACTTTTTGTGTTCCTCTATT-------AG TAACATATCCTGCTTTTCCTA--------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1_1_28 ------------------------------------------------------------ ---------------------------------------------------------TAA CGCCACCTTTGCCTAGTGTTACGAAAC--------------------------------- -------------------TGCCAGAGGATAGATGGAACAA-----------------G- -----CCCCAGAAGACGAAGGG-------------------------------------- ----- >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1_2_29 ------------------------------------------------------------ -----------------GTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGG ATCCTTGGCACTTATCTGGGACGATCT--------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1_1_30 ------------------------------------------------------------ -------------------------------TTCTGGGAAGTT----------------- ------------------------------------------------------------ -------------------CAATTAGGAATACCACATCCC-------------------- -------GCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGG---------------- ----- >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1_1_31 ------------------------------CTCTAGTGTCCATTCATTGTGTGGCTCCCT CT--------------------------GTGGCCCTTGGTCTTCTTGGGCT-------TG TTCCATCTCTCC------------------------------------------------ ---------------------------------T-------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1_1_32 ------------------------------------------------------------ -------------A--------------------GCCATTGCTCTCCAATT-------AC TGTGATATTTCTCATGTTCATCTTGG----------GCCTTAACTATTCCATCTAAAAAT ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1_1_33 ------------------------------------------------------------ ---------------------------TGCTGCTGGCTCAGCTCGTCTCATTCATTCCCT TACAGTAGGCCATCCAATCAC---------------ACTACATATTGACCAC-------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1_1_34 -------------------------TCGGAGTCATTGTTGCTATTACCACCATCTTTTGT TC------------------------------ATAGCAGCCCTGTAATATTTGATTAACA TCTAA------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1_1_35 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------------ATAACCACAGAAAGCATA-------------------- -------GTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACAT- ----- >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1_1_36 ------------------------------------------------------------ --------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCT-------CA TCCTGTCTCCTTGCCACACAATCATCACCTG----------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1_1_37 ACCCAT--CTTATAGCAAAATCCTTTCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG-- --------------------------------CGAATAGCTCTACA-------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1_2_38 ----------------------------------GAGGGGGAGTTGTTGTCTGTACCCCA GACCTG-------AAGCTCTCTTCTTGTGGGGCTGTTGGCTCTGGTCTGCT--------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1_2_39 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------TATAAAGACGCAGAAGTTATT-------------------- -------CCAGCATACACAGGGCAGGAAACAGCATATTTTCTTTTCAAATTAGCAG---- ----- >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1_2_40 ----------------TGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCC-- -------------------------------------------------TTTGAGCCAAT TCCCATACATTATTGTG------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1_1_41 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------GGAAA- -------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA GATAATAGTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA------------------- ----- >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1_1_42 ------------------------------------------------------------ --------------------------------AAGTGCAAGCAATCTGATT-------CA CCCGATTTCTTCCAATTATGA--------------------------------------- --------------TGACAGGTGTAGGTCCTACTAATACAGT------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1_1_43 ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------TATGGTACCAGTTAGAGAA- ---------------AGAACCCCTAGTAGGAGCAGAAACCT------------------- -------TCTATGTAGATGGGGCAGCTAACAG---------------------------- ----- >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1_1_44 ------------------------------------------------------------ --------------------------------------ATTGTACACATTT-------AG AATGAAAAGTTATCCTGGTAG------------------CAGTTCATGTAGCCAGTGGA- -------------------TATATAGAAGCAGA--------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1_1_45 ------------------------------------------------------------ ----------------------------------------------------------TG ACAGAAACCT------------------------------AGTTGGTCCAAAATGCGAAC CCAGATTGTAA----GACAATTTTAAAAGCATTGGGACCA-------------------- -------GC--------------------------------------------------- ----- >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1_1_46 ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------GGTGATATGGGCTGATGTA CCATTTGCCCC----TGGATGTTCTGCACTATAGGGTAATT-----------------TT GGCTGACCTGAT------------------------------------------------ ----- >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1_1_47 -----------GCCTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGG-- -------------------------------------------------TTTGAGAGCCA CCTAGCAATTCA------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1_1_48 -------------------------------------------------------TCCTG AC------------------------------TCCAATACTGTAGGAGATTCCACCAATA TTTGAGGGCTTCCCACCCCCTGC------------------------------------- -------------------GTCCCAGAAGTT----------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1_1_49 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------ATTTTAAAAGCATTGGGACCAGCGGCTACACTAG---AAGA AATGATGACAGCATGTCAGGGAGTAGGATGAC---------------------------- ----- >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1_1_50 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----------------CAACCTATACCAATAGTAGCAATA-------------------- -------GTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGAGTGGTC--------- ---CA >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1_2_51 ------------------------------------------------------------ --------CACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAA GACAAGATATCCTTGATC------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1_1_52 ------------------------------------------------------------ -------------------------CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTA ATCAGTGGGTTCCCTAGTTA----------------GCCAGAGAGCTCCCA--------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1_1_53 ------------------------------------------------------------ ------------------------------------------------------------ ---------------------ACAGT---------AATTGGAGAGCAATGGCTAGTGATT TTAACCTGCCA--------CCTGTAGTAGCAAAAGAAATAGTAGCCCG------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1_1_54 ------------------------------------------------------------ ------------------------------------------------------------ -------AATTT----------------------------ATCAAGAGCCATTTAAAAAT CTGAAAACAGG----AAAATATGCAAGAATGAGGGGTGCC-------------------- CACACTAAT--------------------------------------------------- ----- >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1_1_55 ------------------------------------------------------------ ------------------------------------------TTAAAATTTTCTGTCACA TTTACCAATACTACTTCTTGTGGGTT---------------------------------- ---------------GGGGTCTGTGGGTACACAGGCATGTG------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1_1_56 -------------------------TCCAAGCCCTGTCTTATTCTTCTAGGTATGTGG-- --------------------------------CGCATAGCTCTACAAGCTC-------CT TGTACTACTTCAATAA-------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1_1_57 -----------------------------------------TGTGTTCAGCTGTACTATT ATGGTT-----------------ATAGCATTTTCCGTGAAATTGACAGATCTAATTACTA CCTCTTCT---------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1_1_58 ------------------------------------------------------------ ------------------------------------------------------------ ---GATGGTTTT----------------------------ATAGACATCACTATGAAAGC CCTCATCCAAG----AAAAAGTTCAGAAGTA-------CA-------------------- CATCCCACTAGG------------------------------------------------ ----- >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1_1_59 --------------------TCCTCTGTCGAGTAACGCCTATTCTGCTATGACGACACCC A----------------------ATTCTGAAACTGGATAAACAGCAGTTGTT-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1_1_60 ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------AGTTCATGTATCCAGTGGA- -------------------TATATAGAAGCAGAAGTTATT-------------------- -------CCAGCAGAAACAGGGGCTGAAACAGCATAT----------------------- ----- >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1_1_61 ------------------------------------------------------------ ---------------GGAGCTAGAACGATTCGCAGTTAATCCTGGCGTGTT--------- ------------------------------------------------------------ --------------AGAAACATCAGAAGGCTGTAGACAAATACTGGGA------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1_1_62 ------------------------------------------------------------ -----------------------AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATA CTCCAGTATTTGCCATAAAGAAAAAAGACAGTA--------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1_1_63 ------------------------------------------------------------ ------------------------------------------------------------ ---AGTAAGT------------------------------AGTACCTGTAAC--GCAA-- -------------------CCTATACCAATAGTAGCAATA-------------------- -------GTAGCATTAGTAGTAGCACTAATAAT--------------------------- ----- >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1_2_64 ------------------------------------------------------------ -----------------------------CG------------AGCAAGCTTCACAGGAG TTAAAAAATTGGATGACAGAA---------------ACCTTGTTGGTCCAAAATGCGAAC CCAGAT------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1_1_65 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------GACCAGCAAAGCACCTCTGGAAA- -------------------GGTGAAGGGGCAGTAGTAATAC-----------------AA GATAATAGTGACATAAAAGTAGT------------------------------------- ----- >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1_1_66 C------------------------------------CCCATATTACTATGCTTTCTGTG GT------------------------------------------TAATTTTTGCACTGCC TCTGTTAATTGTTTTACATCATTAGTGT-------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1_1_67 -----------------------------------------------CGGGCACACACT- ------------------------ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTA AGCAGTGGGTTCCCTAGTTA----------------GC---------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1_1_68 ------------------------------------------------------------ --------------CACCCATCCAAAGGAATTGAGGTTCTTTCTGATGTTTTTTGTCTGG TGTGGTAAGTCCCCACCTCGACAG------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1_2_69 ------------------------------------------------------------ ---------------TTTTATGGTTCATAATCCACTCCATGTACTGGTTCTTTTAGAATC TCTCATTTTTCTGCCCGTTCTAG------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ---CT >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1_1_70 --------------------------------------------CTTTATATTTTTTCTT ACCCCC--------------------------TGGCCTTAACCGAATTTTTTCCCATCGA TCTAATTCTCCCCCGCTTAA---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1_1_71 ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------TAG--GAACCAAAGAAAGATAGTTAAGTGTT TCAATTGTGGC-ACAGAAGGGCACACAGCCAGAAATTGCAGG------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1_1_72 ----------------------------------TCTACATAGTCTCTAAAGGGTTCCTT TGGTCCT-------TGTCTTATGTCCAGAATGCTGGTAGGGCTATACATTC--------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1_1_73 ----------------------------------ATAGAGCTTCCTTTAGTTGCCCCCCT ATCTTTATTGTG-AC--------------------------------------------- ------------------------------------------------------------ ----------------GAGGGGACGTTGCCAAAGAGTGACCTGAGG-------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1_1_74 G---------------------------AAGTCTTGAGTTCTCTTATTAA---------- --------------------GTTCTCTGAAATCTACTAATTTTCTCCATTT-------AG TACTGTCTTTTTTC---------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1_1_75 TTTGA------------------------------------------------------- -----T----------TGACTAACTCTGATTCACTTTGATCTTGTAGTGCTTGAATGATT CCTAATGCATATTGTGAGTC---------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1_1_76 ------------------------------------------------------------ --------------------------------------ACTTT---ATATT-------TA TATAATTCACTTCTCCAATTGTCCCTCATCTCTCCT------------------------ -----------CCTCCAGGTCTGAAGATCTCGG--------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1_1_77 ------------------------------------------------------------ ------------------AGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGTA GCCAGTAGATCCTAGACTATAGCCCTGG-------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1_1_78 -------------------------------------CTTCTTCTGTTAGTGGTATTACT TCT--------------------GTTAGTGCTTTGGTACCTCTAAGGAGTT-------TA CATAATTGCCTTAC---------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1_1_79 ----------------------------------AAGCTTGTGTAATTGTTAATTTCTCT GTCCCACT------------------------CCATCCAGGTCGTGTGATTCCAACTCTG TTCCAGAG---------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1_1_80 ------------------------------------------------------------ ---------------------TCCCTGTTCGGGCGCCACTGCTAGAGATTTTCCACACTG ACTAA------------------------------------------------------- --------------AAGGGTCTGAGGGATCTCTAGTTACC-------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1_1_81 ------------------------------------------------------------ ----------GCCACAGAGGGAGCCACACAATGAATGGACACTATAGCTTTT-------- ------------------------------------------------------------ --------------AGAGGAGCTTAAGAATGAAGCTGTTAGA------------------ ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1_1_82 ------------------------------------------------------------ ----------------------------------------------CAGATACCTAAATG ATCAACAGCTCCTGGGGATTTGGGGT---------TGCTCTGGAAAACTCATTTGCACCC CTGCT------------------------------------------------------- ------------------------------------------------------------ ----- >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1_1_83 ------------------------------------------------------------ --------------------AATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGCA GGAAGCAACCACCACTCTATTTTGTGCATC------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----