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annotate test-data/files/NODE_9.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
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2 ------------------------------------------------------------
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3 -----------------CTACCTCTTCTTCTGCTAGACTGCC-------ATTTAACAGCA
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4 GTTGAGTTGATA-----------------------------CTACTGGCCTAATTCCATG
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5 T----GT
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6 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
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7 ------------------------------------------------------------
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8 ---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA-------GTCTAGCAGAA
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9 GAAGAGGTAGTA-----------------------------AT-------TAGATC----
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10 -------
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11 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
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12 ---TAACG--------------------------------------------------CC
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13 ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AAGCCCCAGAAGAC
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14 GAAGGG------------------------------------------------------
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15 -------
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16 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
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17 GTGGAGA-----------------------------------------------------
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18 -----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC------TTGGCACTT
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19 ATCTGGGA------------------------------------------CGATCT----
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20 -------
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21 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
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22 TCCGAAGA--------------------------------------------------TC
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23 GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA--CTCTGTCTCT-
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24 -----------------------------------------------------CTC----
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25 -------
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26 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
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27 CCAAGTA-----------------------------------------------------
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28 --TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGGAAAAT
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29 GTCTA-------------------------------------------------------
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30 -------
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31 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
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32 -----TA-----------------------------------------------------
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33 --TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAATCCTAGGAAAAT
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34 GTCTAAC----------------------------------------------AGC----
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35 -------
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36 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
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37 ----TGC-----------------------------------------------------
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38 --TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAA
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39 AATTAGC----------------------------------------------CTGTCT-
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40 -------
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41 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
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42 AAGTGCAA----------------------------------------------------
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43 ----------------GCAATCTGATTCACCCGATTTCTTCC-------AATTATGATGA
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44 CAGGTGTAGGTC-----------------------------CTACTAATACAGT------
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45 -------
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46 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
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47 GAT---------------------------------------------------------
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48 ----------------------------GGTTTTATAGACATCA-----CTATGAAAGCC
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49 CTCATCCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG--
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50 -------
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51 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
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52 AA----------------------------------------------------------
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53 -------------------------------TTTATCAAGAGCC-----ATTTAAAAATC
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54 TGAAAACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT--
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55 -------
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56 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
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57 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
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58 -----AGGAAGCAACCACCACTCTATT----------------------------TTGTG
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59 CATC--------------------------------------------------------
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60 -------
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61 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
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62 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
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63 -----AGCCAGTAGATCCTAGACTAT------------------------------AGCC
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64 CTGG--------------------------------------------------------
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65 -------
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66 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
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67 --------------------------------------GGAGCT----AGAACGAT----
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68 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT-----GTAGACAAATA
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69 CTGGGA------------------------------------------------------
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70 -------
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71 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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72 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
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73 TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
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74 ------------------------------------------------------------
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75 -------
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76 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
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77 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
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78 TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
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79 ------------------------------------------------------------
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80 -------
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81 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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82 A-------------------------------------GGGATTATGGAAAACAGA----
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83 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG-----ATTAGAACATG
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84 G-----------------------------------------------------------
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85 -------
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86 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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87 ------------CGGGCACAC----------------------------ACT--------
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88 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG-----GTTCCCTAG--
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89 TTAGC-------------------------------------------------------
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90 -------
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91 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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92 ------------------------------------------------------------
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93 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG-----GTTCCCTAG--
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94 TTAGCCAGA----------------------------------------GAGCTCCCA--
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95 -------
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96 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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97 ---------------------------------------------------------TGC
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98 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC-----ATCCAATCACA
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99 CTACATATT-------------------------------------------GACCAC--
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100 -------
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101 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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102 ------------GCTGCTCCC----------------------------ACCCTATCTTG
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103 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC-----ATCCAATCA--
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104 ------------------------------------------------------------
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105 -------
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106 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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107 ------------------------------------------------------------
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108 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA-----ATTCTGAAA--
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109 CTGGATAAA--------------------------------------CAGCAGTTGTT--
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110 -------
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111 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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112 ------------------------------------------------------------
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113 --------------------------------TGCCAAGGATCC-----GTTCACTAA--
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114 TCGAATGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT--
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115 -------
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116 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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117 ------------------------------------------------------------
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118 TTCTGGGAAGTTCAAT----------------TAGGAATACCAC-----ATCCCGCAGGG
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119 TTAAAAAAG---------AAAAAATCAGT------------------AACAGTACTGG--
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120 -------
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121 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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122 ------------------------------------------------------------
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123 CTATG------TTTAC----------------TTCTAATCCCGA-----ATCCTGCAAAG
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124 CTAGATAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT--
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125 -------
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126 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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127 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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128 TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
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129 ------------------------------------------------------------
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130 -------
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131 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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132 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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133 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
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134 ------------------------------------------------------------
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135 -------
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136 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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137 -------------------------------------------------GGCTAATTCAC
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138 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC-----ACCCACAAG--
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139 ------------------------------------------------GCTACTTCCC--
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140 -------
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141 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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142 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC
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143 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT-----ATTTTT-----
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144 ------------------------------------------------------------
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145 -------
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146 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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147 -----------------------------------AATAGTACTTT---CCTGATTCCAG
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148 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC-----TTTGTGTG---
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149 ------------------------------------------------------------
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150 -------
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151 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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152 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
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153 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC-----AG---------
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154 ------------------------------------------------------------
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155 -------
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156 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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157 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
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158 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
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159 ------------------------------------------------------------
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160 -------
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161 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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162 -----------------------------------------ACAGC---GACGAAGAGCT
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163 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC-----AGTAAGTA---
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164 -------------------------------------------------TTACAT-----
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165 -------
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166 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
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167 ------------------------------------------------------------
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168 -------------------------------------AGCCATT-----GCTCTCCAA--
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169 TTACTGTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATC
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170 TAAAAAT