Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_9.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 | |
| 2 ------------------------------------------------------------ | |
| 3 -----------------CTACCTCTTCTTCTGCTAGACTGCC-------ATTTAACAGCA | |
| 4 GTTGAGTTGATA-----------------------------CTACTGGCCTAATTCCATG | |
| 5 T----GT | |
| 6 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 | |
| 7 ------------------------------------------------------------ | |
| 8 ---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA-------GTCTAGCAGAA | |
| 9 GAAGAGGTAGTA-----------------------------AT-------TAGATC---- | |
| 10 ------- | |
| 11 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 | |
| 12 ---TAACG--------------------------------------------------CC | |
| 13 ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AAGCCCCAGAAGAC | |
| 14 GAAGGG------------------------------------------------------ | |
| 15 ------- | |
| 16 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 | |
| 17 GTGGAGA----------------------------------------------------- | |
| 18 -----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC------TTGGCACTT | |
| 19 ATCTGGGA------------------------------------------CGATCT---- | |
| 20 ------- | |
| 21 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 | |
| 22 TCCGAAGA--------------------------------------------------TC | |
| 23 GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA--CTCTGTCTCT- | |
| 24 -----------------------------------------------------CTC---- | |
| 25 ------- | |
| 26 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 | |
| 27 CCAAGTA----------------------------------------------------- | |
| 28 --TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGGAAAAT | |
| 29 GTCTA------------------------------------------------------- | |
| 30 ------- | |
| 31 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 | |
| 32 -----TA----------------------------------------------------- | |
| 33 --TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAATCCTAGGAAAAT | |
| 34 GTCTAAC----------------------------------------------AGC---- | |
| 35 ------- | |
| 36 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 | |
| 37 ----TGC----------------------------------------------------- | |
| 38 --TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAA | |
| 39 AATTAGC----------------------------------------------CTGTCT- | |
| 40 ------- | |
| 41 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 | |
| 42 AAGTGCAA---------------------------------------------------- | |
| 43 ----------------GCAATCTGATTCACCCGATTTCTTCC-------AATTATGATGA | |
| 44 CAGGTGTAGGTC-----------------------------CTACTAATACAGT------ | |
| 45 ------- | |
| 46 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 47 GAT--------------------------------------------------------- | |
| 48 ----------------------------GGTTTTATAGACATCA-----CTATGAAAGCC | |
| 49 CTCATCCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG-- | |
| 50 ------- | |
| 51 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 52 AA---------------------------------------------------------- | |
| 53 -------------------------------TTTATCAAGAGCC-----ATTTAAAAATC | |
| 54 TGAAAACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT-- | |
| 55 ------- | |
| 56 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 57 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- | |
| 58 -----AGGAAGCAACCACCACTCTATT----------------------------TTGTG | |
| 59 CATC-------------------------------------------------------- | |
| 60 ------- | |
| 61 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 62 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- | |
| 63 -----AGCCAGTAGATCCTAGACTAT------------------------------AGCC | |
| 64 CTGG-------------------------------------------------------- | |
| 65 ------- | |
| 66 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 67 --------------------------------------GGAGCT----AGAACGAT---- | |
| 68 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT-----GTAGACAAATA | |
| 69 CTGGGA------------------------------------------------------ | |
| 70 ------- | |
| 71 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 72 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC | |
| 73 TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- | |
| 74 ------------------------------------------------------------ | |
| 75 ------- | |
| 76 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 77 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC | |
| 78 TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- | |
| 79 ------------------------------------------------------------ | |
| 80 ------- | |
| 81 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 82 A-------------------------------------GGGATTATGGAAAACAGA---- | |
| 83 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG-----ATTAGAACATG | |
| 84 G----------------------------------------------------------- | |
| 85 ------- | |
| 86 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 87 ------------CGGGCACAC----------------------------ACT-------- | |
| 88 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG-----GTTCCCTAG-- | |
| 89 TTAGC------------------------------------------------------- | |
| 90 ------- | |
| 91 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 92 ------------------------------------------------------------ | |
| 93 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG-----GTTCCCTAG-- | |
| 94 TTAGCCAGA----------------------------------------GAGCTCCCA-- | |
| 95 ------- | |
| 96 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 97 ---------------------------------------------------------TGC | |
| 98 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC-----ATCCAATCACA | |
| 99 CTACATATT-------------------------------------------GACCAC-- | |
| 100 ------- | |
| 101 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 102 ------------GCTGCTCCC----------------------------ACCCTATCTTG | |
| 103 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC-----ATCCAATCA-- | |
| 104 ------------------------------------------------------------ | |
| 105 ------- | |
| 106 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 107 ------------------------------------------------------------ | |
| 108 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA-----ATTCTGAAA-- | |
| 109 CTGGATAAA--------------------------------------CAGCAGTTGTT-- | |
| 110 ------- | |
| 111 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 112 ------------------------------------------------------------ | |
| 113 --------------------------------TGCCAAGGATCC-----GTTCACTAA-- | |
| 114 TCGAATGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT-- | |
| 115 ------- | |
| 116 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 117 ------------------------------------------------------------ | |
| 118 TTCTGGGAAGTTCAAT----------------TAGGAATACCAC-----ATCCCGCAGGG | |
| 119 TTAAAAAAG---------AAAAAATCAGT------------------AACAGTACTGG-- | |
| 120 ------- | |
| 121 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 122 ------------------------------------------------------------ | |
| 123 CTATG------TTTAC----------------TTCTAATCCCGA-----ATCCTGCAAAG | |
| 124 CTAGATAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT-- | |
| 125 ------- | |
| 126 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 127 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 128 TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- | |
| 129 ------------------------------------------------------------ | |
| 130 ------- | |
| 131 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 132 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 133 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- | |
| 134 ------------------------------------------------------------ | |
| 135 ------- | |
| 136 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 137 -------------------------------------------------GGCTAATTCAC | |
| 138 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC-----ACCCACAAG-- | |
| 139 ------------------------------------------------GCTACTTCCC-- | |
| 140 ------- | |
| 141 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 142 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC | |
| 143 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT-----ATTTTT----- | |
| 144 ------------------------------------------------------------ | |
| 145 ------- | |
| 146 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 147 -----------------------------------AATAGTACTTT---CCTGATTCCAG | |
| 148 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC-----TTTGTGTG--- | |
| 149 ------------------------------------------------------------ | |
| 150 ------- | |
| 151 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 152 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 153 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC-----AG--------- | |
| 154 ------------------------------------------------------------ | |
| 155 ------- | |
| 156 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 157 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 158 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- | |
| 159 ------------------------------------------------------------ | |
| 160 ------- | |
| 161 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 162 -----------------------------------------ACAGC---GACGAAGAGCT | |
| 163 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC-----AGTAAGTA--- | |
| 164 -------------------------------------------------TTACAT----- | |
| 165 ------- | |
| 166 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 167 ------------------------------------------------------------ | |
| 168 -------------------------------------AGCCATT-----GCTCTCCAA-- | |
| 169 TTACTGTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATC | |
| 170 TAAAAAT |