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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
------------------------------------------------------------
-----------------CTACCTCTTCTTCTGCTAGACTGCC-------ATTTAACAGCA
GTTGAGTTGATA-----------------------------CTACTGGCCTAATTCCATG
T----GT
>K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
------------------------------------------------------------
---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA-------GTCTAGCAGAA
GAAGAGGTAGTA-----------------------------AT-------TAGATC----
-------
>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
---TAACG--------------------------------------------------CC
ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AAGCCCCAGAAGAC
GAAGGG------------------------------------------------------
-------
>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
GTGGAGA-----------------------------------------------------
-----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC------TTGGCACTT
ATCTGGGA------------------------------------------CGATCT----
-------
>K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
TCCGAAGA--------------------------------------------------TC
GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA--CTCTGTCTCT-
-----------------------------------------------------CTC----
-------
>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
CCAAGTA-----------------------------------------------------
--TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAATCCTAGGAAAAT
GTCTA-------------------------------------------------------
-------
>K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
-----TA-----------------------------------------------------
--TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAATCCTAGGAAAAT
GTCTAAC----------------------------------------------AGC----
-------
>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
----TGC-----------------------------------------------------
--TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATATCTTCCCTAAAA
AATTAGC----------------------------------------------CTGTCT-
-------
>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
AAGTGCAA----------------------------------------------------
----------------GCAATCTGATTCACCCGATTTCTTCC-------AATTATGATGA
CAGGTGTAGGTC-----------------------------CTACTAATACAGT------
-------
>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
GAT---------------------------------------------------------
----------------------------GGTTTTATAGACATCA-----CTATGAAAGCC
CTCATCCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG--
-------
>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
AA----------------------------------------------------------
-------------------------------TTTATCAAGAGCC-----ATTTAAAAATC
TGAAAACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT--
-------
>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
-----AGGAAGCAACCACCACTCTATT----------------------------TTGTG
CATC--------------------------------------------------------
-------
>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
-----AGCCAGTAGATCCTAGACTAT------------------------------AGCC
CTGG--------------------------------------------------------
-------
>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
--------------------------------------GGAGCT----AGAACGAT----
-----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT-----GTAGACAAATA
CTGGGA------------------------------------------------------
-------
>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
A-------------------------------------GGGATTATGGAAAACAGA----
-----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG-----ATTAGAACATG
G-----------------------------------------------------------
-------
>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
------------CGGGCACAC----------------------------ACT--------
ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG-----GTTCCCTAG--
TTAGC-------------------------------------------------------
-------
>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
------------------------------------------------------------
-CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG-----GTTCCCTAG--
TTAGCCAGA----------------------------------------GAGCTCCCA--
-------
>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
---------------------------------------------------------TGC
TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC-----ATCCAATCACA
CTACATATT-------------------------------------------GACCAC--
-------
>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
------------GCTGCTCCC----------------------------ACCCTATCTTG
TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC-----ATCCAATCA--
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
------------------------------------------------------------
TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA-----ATTCTGAAA--
CTGGATAAA--------------------------------------CAGCAGTTGTT--
-------
>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
------------------------------------------------------------
--------------------------------TGCCAAGGATCC-----GTTCACTAA--
TCGAATGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT--
-------
>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
------------------------------------------------------------
TTCTGGGAAGTTCAAT----------------TAGGAATACCAC-----ATCCCGCAGGG
TTAAAAAAG---------AAAAAATCAGT------------------AACAGTACTGG--
-------
>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
------------------------------------------------------------
CTATG------TTTAC----------------TTCTAATCCCGA-----ATCCTGCAAAG
CTAGATAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT--
-------
>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
-------------------------------------------------GGCTAATTCAC
TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC-----ACCCACAAG--
------------------------------------------------GCTACTTCCC--
-------
>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
---------------------------------ACAACGGAATTGG---AGGAAATGAAC
CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT-----ATTTTT-----
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
-----------------------------------AATAGTACTTT---CCTGATTCCAG
CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC-----TTTGTGTG---
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
-----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC-----AG---------
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
--------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
------------------------------------------------------------
-------
>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
-----------------------------------------ACAGC---GACGAAGAGCT
CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC-----AGTAAGTA---
-------------------------------------------------TTACAT-----
-------
>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
------------------------------------------------------------
-------------------------------------AGCCATT-----GCTCTCCAA--
TTACTGTGA---------TATTTCTCATGTTCATCTTGGGCCTT----AACTATTCCATC
TAAAAAT