Mercurial > repos > dave > pipelign

annotate test-data/files/NODE_3.aln @ 0:9a3a2e04f47a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author dave
date Mon, 10 Jun 2019 16:04:10 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
2 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
3 --------------------GA------TCCTGC-------------ATATAAGCAGCAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
4 CTTTTTGCCTTT------------ACTGGTTCTCTCTGGTTAGAC--CAGATCTGAGCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
5 GGG-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
6 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
7 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
8 -------------------CAG------ATACCT-------------AAATGATCAACAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
9 CTCCTGGGGATT-------------TGGGGTTGCTCTGGAAAACT--CATTTGCACCCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
10 GCT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
11 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
12 GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
13 CAAGAATGCTGGCTGTGGAAAG------ATACCT-------------AAAGGATCAACAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
14 CTCC--------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
15 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
16 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
17 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
18 -----------ACAGTAGAAAA------ATTCCCCTCCACCATTAAAACTGTGGTTACAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
19 TATC---------------------TGGGTCCCCTCC---------------TGAGGATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
20 GGT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
21 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
22 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
23 -----------ACAGTAGAAAA------ATTCCCCTCCACAATTAAAACTGTGGTTACAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
24 TTTC---------------------TGGGTCCCCTCC---------------TGAGGATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
25 GCT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
26 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
27 TCCTG----------------------------------------ACTCCAA--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
28 ----------TACTGTAGGAGA------TTCCAC-----------------------CAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
29 TATT---------------------TGAGGGCTTCCCACCCCCTG--CGTCCCAGAAGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
30 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
31 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
32 --------------------------------------------ATCCTCAT--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
33 -----GCATCTGTTCTACCATG------TCATTTTT-----------CCACATGTTAAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
34 TTTTCTGT-----------------CACATTTAC---CAATACT----------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
35 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
36 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
37 --------------------------------------------TT--------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
38 -------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
39 TGACATGG-----------------TAGA---AC---AGATGCA----------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
40 --------TGAGGATATAA-------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
41 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
42 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
43 -------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
44 TGACATGG-----------------TAGA---AC---AGATGCA----------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
45 --------TGAGGATATAAT-----C
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
46 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
47 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
48 ------------------------------------------------------TTAAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
49 TTTTCTGT-----------------CACATTTAC---CAATACTA--CTTCTTGTGGGTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
50 GGGGTCTGTGGGTACACAGGCATGTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
51 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
52 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
53 ------CACCCATCCAAAGGAA------TTGAGGTT-----------CTTT---CTGATG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
54 TTTTTTGT-----------------CTGGTGTGG---TAAGTCCC--CACCTCGACAG--
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
55 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
56 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
57 CTTTA----------------------------------TATTTTTTCTTAC--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
58 -----CCCCTGGCCTTAACCGA------ATTTTTTC-----------CCATCGATCTAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
59 TCTCC--------------------CCCGCTTAA--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
60 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
61 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
62 TCC------------------------------------CTGTTCG--------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
63 -------GGCGCCACTGCTAGA------GATTTTCC-----------ACACTGACTAAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
64 GGGTCTGA-----------------GGGA---TCTCTAGTTACC----------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
65 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
66 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
67 ----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
68 CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCACTAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
69 TAAT--------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
70 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
71 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
72 --------------------------------------------------------CAAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
73 CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCAATAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
74 TAATAGCAATAG------------TTGAGTGGTC--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
75 --------------------CA----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
76 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
77 ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
78 CTGTAGTAGCAA-AAGAAATAG------TAGCCCG-------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
79 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
80 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
81 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
82 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
83 -TATGGTACCAGTTAGAGAAAG------AACCCCTA-----------GTAGGAGCAGAAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
84 CCTTCTATGTAG------------ATGGGGCAGC--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
85 --------------------TAACAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
86 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
87 -------------------------------------AGTTCATGTATCCAGT-------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
88 ---GGATATATAGAAGCAGAAG------TTATTCCAGCAGAAACAGGGGCTGAAACAGCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
89 TAT---------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
90 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
91 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
92 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
93 ---GGATATATAGAAGCAGA----------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
94 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
95 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
96 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
97 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
98 ------TATAAAGACGCAGAAG------TTATTCCAGCATACACAGGGCAGGAAACAGCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
99 TATTTTCTTTT--------------CAAATTAG---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
100 ----CAG-------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
101 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
102 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
103 ------TGCTAA-----------------------------------TTTTAAAAGACAA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
104 TATTCTGTTTC--------------CTGCCCTGTTTCTGCTGGAA--TAACTTCTGCTTC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
105 TATATAT-------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
106 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
107 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
108 ------GCCA---CAGAGGGAG------CCACACAA-----------TGAATGGACACTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
109 TAGCTTTTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
110 -----------GA-------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
111 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
112 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
113 ------CC--------------------CCATAT---------------------TACTA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
114 TGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTA--CATCATTAG----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
115 ----------TGT-------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
116 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
117 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
118 --------------CAGAGGAG------GTCTCT--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
119 --------------CGACGCAGGACTCGGCTTGCTGAAGGGCGCA--CGGCAAGAGGCGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
120 GGGGCGG-CGACT-------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
121 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
122 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
123 --------GGAAACCAGAGGAG------CTCTCT--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
124 --------------CGACGCAGGACTCGGCTTGCTGAAGCGCGCA--CGGCAAGAGGCGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
125 GGGGCG--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
126 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
127 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
128 ------TAGGAACCAAAGAAAG------ATAGTT--------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
129 --------------AAGTGTTTCAATTGTGGCACAGAAGGGCACA--CAGCCAGAAATTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
130 CAGG----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
131 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
132 CTTCTTC---------------------TGTTAGTGGTATTACTTCTGTTAGTGCTTTGG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
133 TACCTCTAAGGAGTTTACATAA------TTGCCTTAC-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
134 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
135 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
136 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
137 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
138 --------AGGATTTTACATAA------TTGCCTTACTTAAATCCCTGGGTAAATCTGAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
139 TTGCCCAATT---------------CAATTTCCCCA----------------CTA-----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
140 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
141 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
142 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
143 -----ACTTTATATTTATATAA------TTCACTTCTCCAATTGTCC-------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
144 ---CTCATCT---------------CTCCTCCTCCAGGTCTGAAG---ATCTCGG-----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
145 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
146 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
147 TCTTTGC---------------------CTTGGTTGGAGCAACTCCTAATGGTTGAATTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
148 TTACTACTTTATATTTATATAA------TTCCCTTCT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
149 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
150 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
151 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
152 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
153 ---------------TCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGCATAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
154 CTCTACAAGC---------------TCCTTGTACTACTTCAATAA---------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
155 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
156 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
157 ---------------------------------------------------ACCCATCTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
158 ATAGCA-AAATCCTTTCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGAATAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
159 CTCTACA-----------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
160 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
161 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
162 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
163 --TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
164 GGCT------------------------AT---------ACATTC---------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
165 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
166 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
167 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
168 --AATA-GCAATTTGTACAAG-------CAGTTTTAGGCTGACTTCGTGGATGCTTCCAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
169 GGCT------------------------CTCGTCTA-GGATCAAC---------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
170 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
171 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
172 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
173 --TGTG-TTCAGCTGTACTAT-------TATGGTTATAGCATTTTCCGTGAAATTGACAG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
174 ATCTAATTAC---------------TACCTCTTCT-------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
175 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
176 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
177 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
178 --------------------------------CTACTATTGCTACTAATGGTATAGGTTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
179 CGTTACATGT---------------ACTACTTACTGCTTTGATAGAGAAGCTTGAT----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
180 -------------------------G
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
181 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
182 ------------------------------TCGGAGTCATTGTTGCTATTACCACCATCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
183 TTTGTTCATAGCAGCCCTGTAA------TATTTGATT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
184 -----------------------------------------------AACATCTAA----
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
185 --------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
186 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
187 -------------------------------------------TTTGATTG--ACTAACT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
188 CTGATTCACTTTGATCTTGTAG------TGCTTGAAT-----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
189 -----------------------------------------------GATTCCTAATGCA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
190 TAT-----TGTGA----------GTC