view test-data/files/NODE_3.aln @ 0:9a3a2e04f47a draft default tip

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>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
------------------------------------------------------------
--------------------GA------TCCTGC-------------ATATAAGCAGCAG
CTTTTTGCCTTT------------ACTGGTTCTCTCTGGTTAGAC--CAGATCTGAGCCT
GGG-----------------------
>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
------------------------------------------------------------
-------------------CAG------ATACCT-------------AAATGATCAACAG
CTCCTGGGGATT-------------TGGGGTTGCTCTGGAAAACT--CATTTGCACCCCT
GCT-----------------------
>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
CAAGAATGCTGGCTGTGGAAAG------ATACCT-------------AAAGGATCAACAG
CTCC--------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
------------------------------------------------------------
-----------ACAGTAGAAAA------ATTCCCCTCCACCATTAAAACTGTGGTTACAA
TATC---------------------TGGGTCCCCTCC---------------TGAGGATT
GGT-----------------------
>K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
------------------------------------------------------------
-----------ACAGTAGAAAA------ATTCCCCTCCACAATTAAAACTGTGGTTACAA
TTTC---------------------TGGGTCCCCTCC---------------TGAGGATT
GCT-----------------------
>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
TCCTG----------------------------------------ACTCCAA--------
----------TACTGTAGGAGA------TTCCAC-----------------------CAA
TATT---------------------TGAGGGCTTCCCACCCCCTG--CGTCCCAGAAGTT
--------------------------
>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
--------------------------------------------ATCCTCAT--------
-----GCATCTGTTCTACCATG------TCATTTTT-----------CCACATGTTAAAA
TTTTCTGT-----------------CACATTTAC---CAATACT----------------
--------------------------
>K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
--------------------------------------------TT--------------
-------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA
TGACATGG-----------------TAGA---AC---AGATGCA----------------
--------TGAGGATATAA-------
>K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
------------------------------------------------------------
-------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA
TGACATGG-----------------TAGA---AC---AGATGCA----------------
--------TGAGGATATAAT-----C
>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
------------------------------------------------------------
------------------------------------------------------TTAAAA
TTTTCTGT-----------------CACATTTAC---CAATACTA--CTTCTTGTGGGTT
GGGGTCTGTGGGTACACAGGCATGTG
>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
------------------------------------------------------------
------CACCCATCCAAAGGAA------TTGAGGTT-----------CTTT---CTGATG
TTTTTTGT-----------------CTGGTGTGG---TAAGTCCC--CACCTCGACAG--
--------------------------
>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
CTTTA----------------------------------TATTTTTTCTTAC--------
-----CCCCTGGCCTTAACCGA------ATTTTTTC-----------CCATCGATCTAAT
TCTCC--------------------CCCGCTTAA--------------------------
--------------------------
>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
TCC------------------------------------CTGTTCG--------------
-------GGCGCCACTGCTAGA------GATTTTCC-----------ACACTGACTAAAA
GGGTCTGA-----------------GGGA---TCTCTAGTTACC----------------
--------------------------
>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCACTAA
TAAT--------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
--------------------------------------------------------CAAC
CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCAATAA
TAATAGCAATAG------------TTGAGTGGTC--------------------------
--------------------CA----
>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
CTGTAGTAGCAA-AAGAAATAG------TAGCCCG-------------------------
------------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
------------------------------------------------------------
-TATGGTACCAGTTAGAGAAAG------AACCCCTA-----------GTAGGAGCAGAAA
CCTTCTATGTAG------------ATGGGGCAGC--------------------------
--------------------TAACAG
>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
-------------------------------------AGTTCATGTATCCAGT-------
---GGATATATAGAAGCAGAAG------TTATTCCAGCAGAAACAGGGGCTGAAACAGCA
TAT---------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
---GGATATATAGAAGCAGA----------------------------------------
------------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
------------------------------------------------------------
------TATAAAGACGCAGAAG------TTATTCCAGCATACACAGGGCAGGAAACAGCA
TATTTTCTTTT--------------CAAATTAG---------------------------
----CAG-------------------
>K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
------------------------------------------------------------
------TGCTAA-----------------------------------TTTTAAAAGACAA
TATTCTGTTTC--------------CTGCCCTGTTTCTGCTGGAA--TAACTTCTGCTTC
TATATAT-------------------
>K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
------------------------------------------------------------
------GCCA---CAGAGGGAG------CCACACAA-----------TGAATGGACACTA
TAGCTTTTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------
-----------GA-------------
>K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
------------------------------------------------------------
------CC--------------------CCATAT---------------------TACTA
TGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTA--CATCATTAG----
----------TGT-------------
>K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
------------------------------------------------------------
--------------CAGAGGAG------GTCTCT--------------------------
--------------CGACGCAGGACTCGGCTTGCTGAAGGGCGCA--CGGCAAGAGGCGA
GGGGCGG-CGACT-------------
>K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
------------------------------------------------------------
--------GGAAACCAGAGGAG------CTCTCT--------------------------
--------------CGACGCAGGACTCGGCTTGCTGAAGCGCGCA--CGGCAAGAGGCGA
GGGGCG--------------------
>K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
------------------------------------------------------------
------TAGGAACCAAAGAAAG------ATAGTT--------------------------
--------------AAGTGTTTCAATTGTGGCACAGAAGGGCACA--CAGCCAGAAATTG
CAGG----------------------
>K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1
CTTCTTC---------------------TGTTAGTGGTATTACTTCTGTTAGTGCTTTGG
TACCTCTAAGGAGTTTACATAA------TTGCCTTAC-----------------------
------------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1
------------------------------------------------------------
--------AGGATTTTACATAA------TTGCCTTACTTAAATCCCTGGGTAAATCTGAC
TTGCCCAATT---------------CAATTTCCCCA----------------CTA-----
--------------------------
>K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1
------------------------------------------------------------
-----ACTTTATATTTATATAA------TTCACTTCTCCAATTGTCC-------------
---CTCATCT---------------CTCCTCCTCCAGGTCTGAAG---ATCTCGG-----
--------------------------
>K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1
TCTTTGC---------------------CTTGGTTGGAGCAACTCCTAATGGTTGAATTT
TTACTACTTTATATTTATATAA------TTCCCTTCT-----------------------
------------------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1
------------------------------------------------------------
---------------TCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGCATAG
CTCTACAAGC---------------TCCTTGTACTACTTCAATAA---------------
--------------------------
>K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1
---------------------------------------------------ACCCATCTT
ATAGCA-AAATCCTTTCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGAATAG
CTCTACA-----------------------------------------------------
--------------------------
>K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1
------------------------------------------------------------
--TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAG
GGCT------------------------AT---------ACATTC---------------
--------------------------
>K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1
------------------------------------------------------------
--AATA-GCAATTTGTACAAG-------CAGTTTTAGGCTGACTTCGTGGATGCTTCCAG
GGCT------------------------CTCGTCTA-GGATCAAC---------------
--------------------------
>K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1
------------------------------------------------------------
--TGTG-TTCAGCTGTACTAT-------TATGGTTATAGCATTTTCCGTGAAATTGACAG
ATCTAATTAC---------------TACCTCTTCT-------------------------
--------------------------
>K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1
------------------------------------------------------------
--------------------------------CTACTATTGCTACTAATGGTATAGGTTG
CGTTACATGT---------------ACTACTTACTGCTTTGATAGAGAAGCTTGAT----
-------------------------G
>K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1
------------------------------TCGGAGTCATTGTTGCTATTACCACCATCT
TTTGTTCATAGCAGCCCTGTAA------TATTTGATT-----------------------
-----------------------------------------------AACATCTAA----
--------------------------
>K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1
-------------------------------------------TTTGATTG--ACTAACT
CTGATTCACTTTGATCTTGTAG------TGCTTGAAT-----------------------
-----------------------------------------------GATTCCTAATGCA
TAT-----TGTGA----------GTC