diff test-data/files/NODE_3.aln @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/NODE_3.aln	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,190 @@
+>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
+------------------------------------------------------------
+--------------------GA------TCCTGC-------------ATATAAGCAGCAG
+CTTTTTGCCTTT------------ACTGGTTCTCTCTGGTTAGAC--CAGATCTGAGCCT
+GGG-----------------------
+>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
+------------------------------------------------------------
+-------------------CAG------ATACCT-------------AAATGATCAACAG
+CTCCTGGGGATT-------------TGGGGTTGCTCTGGAAAACT--CATTTGCACCCCT
+GCT-----------------------
+>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
+GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
+CAAGAATGCTGGCTGTGGAAAG------ATACCT-------------AAAGGATCAACAG
+CTCC--------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
+------------------------------------------------------------
+-----------ACAGTAGAAAA------ATTCCCCTCCACCATTAAAACTGTGGTTACAA
+TATC---------------------TGGGTCCCCTCC---------------TGAGGATT
+GGT-----------------------
+>K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
+------------------------------------------------------------
+-----------ACAGTAGAAAA------ATTCCCCTCCACAATTAAAACTGTGGTTACAA
+TTTC---------------------TGGGTCCCCTCC---------------TGAGGATT
+GCT-----------------------
+>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
+TCCTG----------------------------------------ACTCCAA--------
+----------TACTGTAGGAGA------TTCCAC-----------------------CAA
+TATT---------------------TGAGGGCTTCCCACCCCCTG--CGTCCCAGAAGTT
+--------------------------
+>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
+--------------------------------------------ATCCTCAT--------
+-----GCATCTGTTCTACCATG------TCATTTTT-----------CCACATGTTAAAA
+TTTTCTGT-----------------CACATTTAC---CAATACT----------------
+--------------------------
+>K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
+--------------------------------------------TT--------------
+-------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA
+TGACATGG-----------------TAGA---AC---AGATGCA----------------
+--------TGAGGATATAA-------
+>K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
+------------------------------------------------------------
+-------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA
+TGACATGG-----------------TAGA---AC---AGATGCA----------------
+--------TGAGGATATAAT-----C
+>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
+------------------------------------------------------------
+------------------------------------------------------TTAAAA
+TTTTCTGT-----------------CACATTTAC---CAATACTA--CTTCTTGTGGGTT
+GGGGTCTGTGGGTACACAGGCATGTG
+>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
+------------------------------------------------------------
+------CACCCATCCAAAGGAA------TTGAGGTT-----------CTTT---CTGATG
+TTTTTTGT-----------------CTGGTGTGG---TAAGTCCC--CACCTCGACAG--
+--------------------------
+>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
+CTTTA----------------------------------TATTTTTTCTTAC--------
+-----CCCCTGGCCTTAACCGA------ATTTTTTC-----------CCATCGATCTAAT
+TCTCC--------------------CCCGCTTAA--------------------------
+--------------------------
+>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
+TCC------------------------------------CTGTTCG--------------
+-------GGCGCCACTGCTAGA------GATTTTCC-----------ACACTGACTAAAA
+GGGTCTGA-----------------GGGA---TCTCTAGTTACC----------------
+--------------------------
+>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
+----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
+CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCACTAA
+TAAT--------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
+--------------------------------------------------------CAAC
+CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCAATAA
+TAATAGCAATAG------------TTGAGTGGTC--------------------------
+--------------------CA----
+>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
+ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
+CTGTAGTAGCAA-AAGAAATAG------TAGCCCG-------------------------
+------------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
+------------------------------------------------------------
+-TATGGTACCAGTTAGAGAAAG------AACCCCTA-----------GTAGGAGCAGAAA
+CCTTCTATGTAG------------ATGGGGCAGC--------------------------
+--------------------TAACAG
+>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
+-------------------------------------AGTTCATGTATCCAGT-------
+---GGATATATAGAAGCAGAAG------TTATTCCAGCAGAAACAGGGGCTGAAACAGCA
+TAT---------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
+ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
+---GGATATATAGAAGCAGA----------------------------------------
+------------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
+------------------------------------------------------------
+------TATAAAGACGCAGAAG------TTATTCCAGCATACACAGGGCAGGAAACAGCA
+TATTTTCTTTT--------------CAAATTAG---------------------------
+----CAG-------------------
+>K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
+------------------------------------------------------------
+------TGCTAA-----------------------------------TTTTAAAAGACAA
+TATTCTGTTTC--------------CTGCCCTGTTTCTGCTGGAA--TAACTTCTGCTTC
+TATATAT-------------------
+>K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
+------------------------------------------------------------
+------GCCA---CAGAGGGAG------CCACACAA-----------TGAATGGACACTA
+TAGCTTTTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------
+-----------GA-------------
+>K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
+------------------------------------------------------------
+------CC--------------------CCATAT---------------------TACTA
+TGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTA--CATCATTAG----
+----------TGT-------------
+>K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
+------------------------------------------------------------
+--------------CAGAGGAG------GTCTCT--------------------------
+--------------CGACGCAGGACTCGGCTTGCTGAAGGGCGCA--CGGCAAGAGGCGA
+GGGGCGG-CGACT-------------
+>K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
+------------------------------------------------------------
+--------GGAAACCAGAGGAG------CTCTCT--------------------------
+--------------CGACGCAGGACTCGGCTTGCTGAAGCGCGCA--CGGCAAGAGGCGA
+GGGGCG--------------------
+>K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
+------------------------------------------------------------
+------TAGGAACCAAAGAAAG------ATAGTT--------------------------
+--------------AAGTGTTTCAATTGTGGCACAGAAGGGCACA--CAGCCAGAAATTG
+CAGG----------------------
+>K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1
+CTTCTTC---------------------TGTTAGTGGTATTACTTCTGTTAGTGCTTTGG
+TACCTCTAAGGAGTTTACATAA------TTGCCTTAC-----------------------
+------------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1
+------------------------------------------------------------
+--------AGGATTTTACATAA------TTGCCTTACTTAAATCCCTGGGTAAATCTGAC
+TTGCCCAATT---------------CAATTTCCCCA----------------CTA-----
+--------------------------
+>K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1
+------------------------------------------------------------
+-----ACTTTATATTTATATAA------TTCACTTCTCCAATTGTCC-------------
+---CTCATCT---------------CTCCTCCTCCAGGTCTGAAG---ATCTCGG-----
+--------------------------
+>K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1
+TCTTTGC---------------------CTTGGTTGGAGCAACTCCTAATGGTTGAATTT
+TTACTACTTTATATTTATATAA------TTCCCTTCT-----------------------
+------------------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1
+------------------------------------------------------------
+---------------TCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGCATAG
+CTCTACAAGC---------------TCCTTGTACTACTTCAATAA---------------
+--------------------------
+>K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1
+---------------------------------------------------ACCCATCTT
+ATAGCA-AAATCCTTTCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGAATAG
+CTCTACA-----------------------------------------------------
+--------------------------
+>K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1
+------------------------------------------------------------
+--TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAG
+GGCT------------------------AT---------ACATTC---------------
+--------------------------
+>K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1
+------------------------------------------------------------
+--AATA-GCAATTTGTACAAG-------CAGTTTTAGGCTGACTTCGTGGATGCTTCCAG
+GGCT------------------------CTCGTCTA-GGATCAAC---------------
+--------------------------
+>K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1
+------------------------------------------------------------
+--TGTG-TTCAGCTGTACTAT-------TATGGTTATAGCATTTTCCGTGAAATTGACAG
+ATCTAATTAC---------------TACCTCTTCT-------------------------
+--------------------------
+>K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1
+------------------------------------------------------------
+--------------------------------CTACTATTGCTACTAATGGTATAGGTTG
+CGTTACATGT---------------ACTACTTACTGCTTTGATAGAGAAGCTTGAT----
+-------------------------G
+>K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1
+------------------------------TCGGAGTCATTGTTGCTATTACCACCATCT
+TTTGTTCATAGCAGCCCTGTAA------TATTTGATT-----------------------
+-----------------------------------------------AACATCTAA----
+--------------------------
+>K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1
+-------------------------------------------TTTGATTG--ACTAACT
+CTGATTCACTTTGATCTTGTAG------TGCTTGAAT-----------------------
+-----------------------------------------------GATTCCTAATGCA
+TAT-----TGTGA----------GTC