Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_3.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 | |
| 2 ------------------------------------------------------------ | |
| 3 --------------------GA------TCCTGC-------------ATATAAGCAGCAG | |
| 4 CTTTTTGCCTTT------------ACTGGTTCTCTCTGGTTAGAC--CAGATCTGAGCCT | |
| 5 GGG----------------------- | |
| 6 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 | |
| 7 ------------------------------------------------------------ | |
| 8 -------------------CAG------ATACCT-------------AAATGATCAACAG | |
| 9 CTCCTGGGGATT-------------TGGGGTTGCTCTGGAAAACT--CATTTGCACCCCT | |
| 10 GCT----------------------- | |
| 11 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 | |
| 12 GTCTGG----------------------------GGCATCAAGCAGCTCCAGG------- | |
| 13 CAAGAATGCTGGCTGTGGAAAG------ATACCT-------------AAAGGATCAACAG | |
| 14 CTCC-------------------------------------------------------- | |
| 15 -------------------------- | |
| 16 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 | |
| 17 ------------------------------------------------------------ | |
| 18 -----------ACAGTAGAAAA------ATTCCCCTCCACCATTAAAACTGTGGTTACAA | |
| 19 TATC---------------------TGGGTCCCCTCC---------------TGAGGATT | |
| 20 GGT----------------------- | |
| 21 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 | |
| 22 ------------------------------------------------------------ | |
| 23 -----------ACAGTAGAAAA------ATTCCCCTCCACAATTAAAACTGTGGTTACAA | |
| 24 TTTC---------------------TGGGTCCCCTCC---------------TGAGGATT | |
| 25 GCT----------------------- | |
| 26 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 | |
| 27 TCCTG----------------------------------------ACTCCAA-------- | |
| 28 ----------TACTGTAGGAGA------TTCCAC-----------------------CAA | |
| 29 TATT---------------------TGAGGGCTTCCCACCCCCTG--CGTCCCAGAAGTT | |
| 30 -------------------------- | |
| 31 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 | |
| 32 --------------------------------------------ATCCTCAT-------- | |
| 33 -----GCATCTGTTCTACCATG------TCATTTTT-----------CCACATGTTAAAA | |
| 34 TTTTCTGT-----------------CACATTTAC---CAATACT---------------- | |
| 35 -------------------------- | |
| 36 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 | |
| 37 --------------------------------------------TT-------------- | |
| 38 -------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA | |
| 39 TGACATGG-----------------TAGA---AC---AGATGCA---------------- | |
| 40 --------TGAGGATATAA------- | |
| 41 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 | |
| 42 ------------------------------------------------------------ | |
| 43 -------GGTAAATGTGACAGA------AAATTTTA-----------ACATGTGGAAAAA | |
| 44 TGACATGG-----------------TAGA---AC---AGATGCA---------------- | |
| 45 --------TGAGGATATAAT-----C | |
| 46 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 | |
| 47 ------------------------------------------------------------ | |
| 48 ------------------------------------------------------TTAAAA | |
| 49 TTTTCTGT-----------------CACATTTAC---CAATACTA--CTTCTTGTGGGTT | |
| 50 GGGGTCTGTGGGTACACAGGCATGTG | |
| 51 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 | |
| 52 ------------------------------------------------------------ | |
| 53 ------CACCCATCCAAAGGAA------TTGAGGTT-----------CTTT---CTGATG | |
| 54 TTTTTTGT-----------------CTGGTGTGG---TAAGTCCC--CACCTCGACAG-- | |
| 55 -------------------------- | |
| 56 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 | |
| 57 CTTTA----------------------------------TATTTTTTCTTAC-------- | |
| 58 -----CCCCTGGCCTTAACCGA------ATTTTTTC-----------CCATCGATCTAAT | |
| 59 TCTCC--------------------CCCGCTTAA-------------------------- | |
| 60 -------------------------- | |
| 61 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 | |
| 62 TCC------------------------------------CTGTTCG-------------- | |
| 63 -------GGCGCCACTGCTAGA------GATTTTCC-----------ACACTGACTAAAA | |
| 64 GGGTCTGA-----------------GGGA---TCTCTAGTTACC---------------- | |
| 65 -------------------------- | |
| 66 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 | |
| 67 ----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC | |
| 68 CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCACTAA | |
| 69 TAAT-------------------------------------------------------- | |
| 70 -------------------------- | |
| 71 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 | |
| 72 --------------------------------------------------------CAAC | |
| 73 CTATACCAATAG-TAGCAATAG------TAGCATTA-----------GTAGTAGCAATAA | |
| 74 TAATAGCAATAG------------TTGAGTGGTC-------------------------- | |
| 75 --------------------CA---- | |
| 76 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 | |
| 77 ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC | |
| 78 CTGTAGTAGCAA-AAGAAATAG------TAGCCCG------------------------- | |
| 79 ------------------------------------------------------------ | |
| 80 -------------------------- | |
| 81 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 | |
| 82 ------------------------------------------------------------ | |
| 83 -TATGGTACCAGTTAGAGAAAG------AACCCCTA-----------GTAGGAGCAGAAA | |
| 84 CCTTCTATGTAG------------ATGGGGCAGC-------------------------- | |
| 85 --------------------TAACAG | |
| 86 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 | |
| 87 -------------------------------------AGTTCATGTATCCAGT------- | |
| 88 ---GGATATATAGAAGCAGAAG------TTATTCCAGCAGAAACAGGGGCTGAAACAGCA | |
| 89 TAT--------------------------------------------------------- | |
| 90 -------------------------- | |
| 91 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 | |
| 92 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT------- | |
| 93 ---GGATATATAGAAGCAGA---------------------------------------- | |
| 94 ------------------------------------------------------------ | |
| 95 -------------------------- | |
| 96 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 | |
| 97 ------------------------------------------------------------ | |
| 98 ------TATAAAGACGCAGAAG------TTATTCCAGCATACACAGGGCAGGAAACAGCA | |
| 99 TATTTTCTTTT--------------CAAATTAG--------------------------- | |
| 100 ----CAG------------------- | |
| 101 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 | |
| 102 ------------------------------------------------------------ | |
| 103 ------TGCTAA-----------------------------------TTTTAAAAGACAA | |
| 104 TATTCTGTTTC--------------CTGCCCTGTTTCTGCTGGAA--TAACTTCTGCTTC | |
| 105 TATATAT------------------- | |
| 106 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 | |
| 107 ------------------------------------------------------------ | |
| 108 ------GCCA---CAGAGGGAG------CCACACAA-----------TGAATGGACACTA | |
| 109 TAGCTTTTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------ | |
| 110 -----------GA------------- | |
| 111 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 | |
| 112 ------------------------------------------------------------ | |
| 113 ------CC--------------------CCATAT---------------------TACTA | |
| 114 TGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTA--CATCATTAG---- | |
| 115 ----------TGT------------- | |
| 116 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 | |
| 117 ------------------------------------------------------------ | |
| 118 --------------CAGAGGAG------GTCTCT-------------------------- | |
| 119 --------------CGACGCAGGACTCGGCTTGCTGAAGGGCGCA--CGGCAAGAGGCGA | |
| 120 GGGGCGG-CGACT------------- | |
| 121 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 | |
| 122 ------------------------------------------------------------ | |
| 123 --------GGAAACCAGAGGAG------CTCTCT-------------------------- | |
| 124 --------------CGACGCAGGACTCGGCTTGCTGAAGCGCGCA--CGGCAAGAGGCGA | |
| 125 GGGGCG-------------------- | |
| 126 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 | |
| 127 ------------------------------------------------------------ | |
| 128 ------TAGGAACCAAAGAAAG------ATAGTT-------------------------- | |
| 129 --------------AAGTGTTTCAATTGTGGCACAGAAGGGCACA--CAGCCAGAAATTG | |
| 130 CAGG---------------------- | |
| 131 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1 | |
| 132 CTTCTTC---------------------TGTTAGTGGTATTACTTCTGTTAGTGCTTTGG | |
| 133 TACCTCTAAGGAGTTTACATAA------TTGCCTTAC----------------------- | |
| 134 ------------------------------------------------------------ | |
| 135 -------------------------- | |
| 136 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1 | |
| 137 ------------------------------------------------------------ | |
| 138 --------AGGATTTTACATAA------TTGCCTTACTTAAATCCCTGGGTAAATCTGAC | |
| 139 TTGCCCAATT---------------CAATTTCCCCA----------------CTA----- | |
| 140 -------------------------- | |
| 141 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1 | |
| 142 ------------------------------------------------------------ | |
| 143 -----ACTTTATATTTATATAA------TTCACTTCTCCAATTGTCC------------- | |
| 144 ---CTCATCT---------------CTCCTCCTCCAGGTCTGAAG---ATCTCGG----- | |
| 145 -------------------------- | |
| 146 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1 | |
| 147 TCTTTGC---------------------CTTGGTTGGAGCAACTCCTAATGGTTGAATTT | |
| 148 TTACTACTTTATATTTATATAA------TTCCCTTCT----------------------- | |
| 149 ------------------------------------------------------------ | |
| 150 -------------------------- | |
| 151 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1 | |
| 152 ------------------------------------------------------------ | |
| 153 ---------------TCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGCATAG | |
| 154 CTCTACAAGC---------------TCCTTGTACTACTTCAATAA--------------- | |
| 155 -------------------------- | |
| 156 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1 | |
| 157 ---------------------------------------------------ACCCATCTT | |
| 158 ATAGCA-AAATCCTTTCCAAG-----CCCTGTCTTATTCTTCTAGGTATGTGGCGAATAG | |
| 159 CTCTACA----------------------------------------------------- | |
| 160 -------------------------- | |
| 161 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1 | |
| 162 ------------------------------------------------------------ | |
| 163 --TCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTCTTATGTCCAGAATGCTGGTAG | |
| 164 GGCT------------------------AT---------ACATTC--------------- | |
| 165 -------------------------- | |
| 166 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1 | |
| 167 ------------------------------------------------------------ | |
| 168 --AATA-GCAATTTGTACAAG-------CAGTTTTAGGCTGACTTCGTGGATGCTTCCAG | |
| 169 GGCT------------------------CTCGTCTA-GGATCAAC--------------- | |
| 170 -------------------------- | |
| 171 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1 | |
| 172 ------------------------------------------------------------ | |
| 173 --TGTG-TTCAGCTGTACTAT-------TATGGTTATAGCATTTTCCGTGAAATTGACAG | |
| 174 ATCTAATTAC---------------TACCTCTTCT------------------------- | |
| 175 -------------------------- | |
| 176 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1 | |
| 177 ------------------------------------------------------------ | |
| 178 --------------------------------CTACTATTGCTACTAATGGTATAGGTTG | |
| 179 CGTTACATGT---------------ACTACTTACTGCTTTGATAGAGAAGCTTGAT---- | |
| 180 -------------------------G | |
| 181 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1 | |
| 182 ------------------------------TCGGAGTCATTGTTGCTATTACCACCATCT | |
| 183 TTTGTTCATAGCAGCCCTGTAA------TATTTGATT----------------------- | |
| 184 -----------------------------------------------AACATCTAA---- | |
| 185 -------------------------- | |
| 186 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1 | |
| 187 -------------------------------------------TTTGATTG--ACTAACT | |
| 188 CTGATTCACTTTGATCTTGTAG------TGCTTGAAT----------------------- | |
| 189 -----------------------------------------------GATTCCTAATGCA | |
| 190 TAT-----TGTGA----------GTC |