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annotate test-data/files/NODE_27.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
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2 GAT---------------------------------------------------------
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3 ----------------------------GGTTTTATAGACATCACTATGAAAGCCCTCAT
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4 CCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG
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5 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
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6 AA----------------------------------------------------------
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7 -------------------------------TTTATCAAGAGCCATTTAAAAATCTGAAA
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8 ACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT
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9 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
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10 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
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11 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC-
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12 -----------------------------------------------------
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13 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
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14 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
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15 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG-
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16 -----------------------------------------------------
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17 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
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18 --------------------------------------GGAGCT----AGAACGAT----
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19 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG
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20 A----------------------------------------------------
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21 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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22 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
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23 TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
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24 -----------------------------------------------------
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25 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
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26 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
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27 TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
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28 -----------------------------------------------------
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29 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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30 A-------------------------------------GGGATTATGGAAAACAGA----
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31 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG----
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32 -----------------------------------------------------
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33 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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34 ------------CGGGCACAC----------------------------ACT--------
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35 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC
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36 -----------------------------------------------------
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37 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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38 ------------------------------------------------------------
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39 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC
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40 CAGA----------------------------------------GAGCTCCCA
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41 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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42 ---------------------------------------------------------TGC
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43 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
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44 TATT-------------------------------------------GACCAC
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45 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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46 ------------GCTGCTCCC----------------------------ACCCTATCTTG
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47 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------
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48 -----------------------------------------------------
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49 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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50 ------------------------------------------------------------
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51 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA
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52 TAAA--------------------------------------CAGCAGTTGTT
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53 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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54 ------------------------------------------------------------
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55 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA
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56 TGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT
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57 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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58 ------------------------------------------------------------
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59 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA
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60 AAAG---------AAAAAATCAGT------------------AACAGTACTGG
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61 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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62 ------------------------------------------------------------
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63 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA
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64 TAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT
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65 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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66 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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67 TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
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68 -----------------------------------------------------
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69 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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70 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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71 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
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72 -----------------------------------------------------
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73 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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74 -------------------------------------------------GGCTAATTCAC
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75 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------
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76 -------------------------------------------GCTACTTCCC
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77 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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78 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC
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79 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------
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80 -----------------------------------------------------
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81 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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82 -----------------------------------AATAGTACTTT---CCTGATTCCAG
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83 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------
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84 -----------------------------------------------------
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85 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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86 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
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87 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------
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88 -----------------------------------------------------
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89 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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90 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
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91 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
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92 -----------------------------------------------------
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93 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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94 -----------------------------------------ACAGC---GACGAAGAGCT
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95 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------
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96 --------------------------------------------TTACAT---