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comparison test-data/files/NODE_27.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
2 GAT---------------------------------------------------------
3 ----------------------------GGTTTTATAGACATCACTATGAAAGCCCTCAT
4 CCAAGAAAAAGTTCAGAAGTACACA------------------TCCCACTAGG
5 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
6 AA----------------------------------------------------------
7 -------------------------------TTTATCAAGAGCCATTTAAAAATCTGAAA
8 ACAGGAAAATATGCAAGAATGAGGGG--------------TGCCCACACTAAT
9 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
10 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
11 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC-
12 -----------------------------------------------------
13 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
14 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
15 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG-
16 -----------------------------------------------------
17 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
18 --------------------------------------GGAGCT----AGAACGAT----
19 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG
20 A----------------------------------------------------
21 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
22 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
23 TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
24 -----------------------------------------------------
25 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
26 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
27 TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
28 -----------------------------------------------------
29 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
30 A-------------------------------------GGGATTATGGAAAACAGA----
31 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG----
32 -----------------------------------------------------
33 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
34 ------------CGGGCACAC----------------------------ACT--------
35 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC
36 -----------------------------------------------------
37 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
38 ------------------------------------------------------------
39 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC
40 CAGA----------------------------------------GAGCTCCCA
41 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
42 ---------------------------------------------------------TGC
43 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
44 TATT-------------------------------------------GACCAC
45 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
46 ------------GCTGCTCCC----------------------------ACCCTATCTTG
47 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------
48 -----------------------------------------------------
49 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
50 ------------------------------------------------------------
51 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA
52 TAAA--------------------------------------CAGCAGTTGTT
53 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
54 ------------------------------------------------------------
55 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA
56 TGGA---------TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT
57 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
58 ------------------------------------------------------------
59 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA
60 AAAG---------AAAAAATCAGT------------------AACAGTACTGG
61 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
62 ------------------------------------------------------------
63 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA
64 TAAAT----TGCTTGTAACTCAGTC-----------------TTCTGATTTGT
65 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
66 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
67 TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
68 -----------------------------------------------------
69 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
70 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
71 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
72 -----------------------------------------------------
73 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
74 -------------------------------------------------GGCTAATTCAC
75 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------
76 -------------------------------------------GCTACTTCCC
77 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
78 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC
79 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------
80 -----------------------------------------------------
81 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
82 -----------------------------------AATAGTACTTT---CCTGATTCCAG
83 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------
84 -----------------------------------------------------
85 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
86 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
87 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------
88 -----------------------------------------------------
89 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
90 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
91 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
92 -----------------------------------------------------
93 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
94 -----------------------------------------ACAGC---GACGAAGAGCT
95 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------
96 --------------------------------------------TTACAT---