view kraken_summarize.xml @ 14:fd27c97c8366 draft default tip

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<tool id="kraken_summarize" name="kraken_summarize">
	<description></description>
	<requirements>
	  <requirement type="package" version="2.7">python</requirement>
          <requirement type="package" version="1.65">biopython<requirement>
	</requirements>
	<command interpreter="python">kraken_summarize.py
		  --krona-output=$krona_output
			--output=$tax_summary
			--call-krona=$krona_html
			$kraken_summary_tsv
	</command>


	<inputs>
		<param format="tabular" name="kraken_summary_tsv" type="data" label="Kraken summary table"/>
		</inputs>
	<outputs>
		<data format="html" name="krona_html" label="Krona visualization of ${tool.name}" />
		<data format="tabular" name="krona_output" label="Krona input" />
		<data format="tabular" name="tax_summary" label="Taxonomy class summary" />
	</outputs>

	<help>
	Krona visualisation and classification summary of Kraken runs.
	</help>
</tool>