Mercurial > repos > cschu > kraken_tools
diff kraken_summarize.xml @ 14:fd27c97c8366 draft default tip
Uploaded
| author | cschu |
|---|---|
| date | Mon, 18 May 2015 15:55:47 -0400 |
| parents | df4163858937 |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/kraken_summarize.xml Mon May 18 15:55:47 2015 -0400 @@ -0,0 +1,27 @@ +<tool id="kraken_summarize" name="kraken_summarize"> + <description></description> + <requirements> + <requirement type="package" version="2.7">python</requirement> + <requirement type="package" version="1.65">biopython<requirement> + </requirements> + <command interpreter="python">kraken_summarize.py + --krona-output=$krona_output + --output=$tax_summary + --call-krona=$krona_html + $kraken_summary_tsv + </command> + + + <inputs> + <param format="tabular" name="kraken_summary_tsv" type="data" label="Kraken summary table"/> + </inputs> + <outputs> + <data format="html" name="krona_html" label="Krona visualization of ${tool.name}" /> + <data format="tabular" name="krona_output" label="Krona input" /> + <data format="tabular" name="tax_summary" label="Taxonomy class summary" /> + </outputs> + + <help> + Krona visualisation and classification summary of Kraken runs. + </help> +</tool>