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1 <tool id="kraken_summarize" name="kraken_summarize">
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2 <description></description>
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3 <requirements>
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4 <requirement type="package" version="2.7">python</requirement>
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5 <requirement type="package" version="1.65">biopython<requirement>
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6 </requirements>
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7 <command interpreter="python">kraken_summarize.py
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8 --krona-output=$krona_output
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9 --output=$tax_summary
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10 --call-krona=$krona_html
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11 $kraken_summary_tsv
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12 </command>
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13
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14
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15 <inputs>
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16 <param format="tabular" name="kraken_summary_tsv" type="data" label="Kraken summary table"/>
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17 </inputs>
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18 <outputs>
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19 <data format="html" name="krona_html" label="Krona visualization of ${tool.name}" />
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20 <data format="tabular" name="krona_output" label="Krona input" />
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21 <data format="tabular" name="tax_summary" label="Taxonomy class summary" />
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22 </outputs>
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23
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24 <help>
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25 Krona visualisation and classification summary of Kraken runs.
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26 </help>
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27 </tool>
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