view gff3_splitgff.xml @ 0:f678e282b320 draft default tip

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<?xml version="1.0"?>
<tool id="edu.tamu.cpt2.gff3.splitGff" name="Split GFF3+Fasta into separate parts" version="22.0.0">
  <description></description>
  <macros>
    <import>macros.xml</import>
		<import>cpt-macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[
python $__tool_directory__/gff3_splitgff.py
$input

--gff $gff_out
--fasta $fasta_out
]]></command>
  <inputs>
    <param label="Combined GFF3/Fasta File" name="input" type="data" format="gff,gff3"/>
  </inputs>
  <outputs>
    <data format="gff3" label="GFF Portion of ${input.name}" name="gff_out"/>
    <data format="fasta" label="Fasta Portion of ${input.name}" name="fasta_out"/>
  </outputs>
  <tests>
		<test>
			<param name="input" value="Miro_SplitIn.gff3" />
			<output name="gff" file="Miro_SplitOut.gff3" />
			<output name="fasta" file="Miro_SplitOut.fa" />
		</test>
  </tests>
  <help><![CDATA[
**What it does**

Splits apart the GFF3/Fasta data in a combined file into separate fasta and gff3 files.
      ]]></help>
		<expand macro="citations" />
</tool>