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1 <?xml version="1.0"?>
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2 <tool id="edu.tamu.cpt2.gff3.splitGff" name="Split GFF3+Fasta into separate parts" version="22.0.0">
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3 <description></description>
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4 <macros>
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5 <import>macros.xml</import>
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6 <import>cpt-macros.xml</import>
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7 </macros>
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8 <expand macro="requirements"/>
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9 <command detect_errors="aggressive"><![CDATA[
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10 python $__tool_directory__/gff3_splitgff.py
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11 $input
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12
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13 --gff $gff_out
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14 --fasta $fasta_out
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15 ]]></command>
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16 <inputs>
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17 <param label="Combined GFF3/Fasta File" name="input" type="data" format="gff,gff3"/>
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18 </inputs>
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19 <outputs>
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20 <data format="gff3" label="GFF Portion of ${input.name}" name="gff_out"/>
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21 <data format="fasta" label="Fasta Portion of ${input.name}" name="fasta_out"/>
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22 </outputs>
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23 <tests>
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24 <test>
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25 <param name="input" value="Miro_SplitIn.gff3" />
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26 <output name="gff" file="Miro_SplitOut.gff3" />
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27 <output name="fasta" file="Miro_SplitOut.fa" />
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28 </test>
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29 </tests>
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30 <help><![CDATA[
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31 **What it does**
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32
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33 Splits apart the GFF3/Fasta data in a combined file into separate fasta and gff3 files.
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34 ]]></help>
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35 <expand macro="citations" />
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36 </tool>
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