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diff gff3_splitgff.xml @ 0:f678e282b320 draft default tip

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"planemo upload"
author cpt_testbed
date Fri, 06 May 2022 07:07:23 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gff3_splitgff.xml	Fri May 06 07:07:23 2022 +0000
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool id="edu.tamu.cpt2.gff3.splitGff" name="Split GFF3+Fasta into separate parts" version="22.0.0">
+  <description></description>
+  <macros>
+    <import>macros.xml</import>
+		<import>cpt-macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/gff3_splitgff.py
+$input
+
+--gff $gff_out
+--fasta $fasta_out
+]]></command>
+  <inputs>
+    <param label="Combined GFF3/Fasta File" name="input" type="data" format="gff,gff3"/>
+  </inputs>
+  <outputs>
+    <data format="gff3" label="GFF Portion of ${input.name}" name="gff_out"/>
+    <data format="fasta" label="Fasta Portion of ${input.name}" name="fasta_out"/>
+  </outputs>
+  <tests>
+		<test>
+			<param name="input" value="Miro_SplitIn.gff3" />
+			<output name="gff" file="Miro_SplitOut.gff3" />
+			<output name="fasta" file="Miro_SplitOut.fa" />
+		</test>
+  </tests>
+  <help><![CDATA[
+**What it does**
+
+Splits apart the GFF3/Fasta data in a combined file into separate fasta and gff3 files.
+      ]]></help>
+		<expand macro="citations" />
+</tool>