Mercurial > repos > chrisw > monorail_test
changeset 6:4104eb494bf8 draft
Uploaded
| author | chrisw |
|---|---|
| date | Tue, 12 Feb 2019 13:58:37 -0500 |
| parents | d2d9937d1f9c |
| children | 03be34974b83 |
| files | monorail.xml |
| diffstat | 1 files changed, 9 insertions(+), 11 deletions(-) [+] |
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--- a/monorail.xml Tue Feb 12 13:51:52 2019 -0500 +++ b/monorail.xml Tue Feb 12 13:58:37 2019 -0500 @@ -103,17 +103,15 @@ <!-- <expand macro="dbKeyActions" /> --> <outputs> - <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out"> - </data> - <data format="interval" name="chimeric_junctions" label="${tool.name} on ${on_string}: chimeric junctions" from_work_dir="Chimeric.out.junction"> - </data> - - <data format="interval" name="splice_junctions" label="${tool.name} on ${on_string}: splice junctions.bed" from_work_dir="SJ.out.tab"> - </data> - <data name="mapped_reads" format="bam" label="${tool.name} on ${on_string}: mapped.bam" from_work_dir="sorted.bam"> - </data> - <data name="mapped_reads_index" format="bai" label="${tool.name} on ${on_string}: mapped.bam.bai" from_work_dir="sorted.bam.bai"> - </data> + <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out"/> + <data format="txt" name="auc" label="${tool.name} on ${on_string}: AUC" from_work_dir="bc.auc.tsv"> + <data format="txt" name="bc_log" label="${tool.name} on ${on_string}: bamcount log" from_work_dir="bc.log"> + <!-- + <data format="interval" name="chimeric_junctions" label="${tool.name} on ${on_string}: chimeric junctions" from_work_dir="Chimeric.out.junction"/> + <data format="interval" name="splice_junctions" label="${tool.name} on ${on_string}: splice junctions.bed" from_work_dir="SJ.out.tab"/> + <data name="mapped_reads" format="bam" label="${tool.name} on ${on_string}: mapped.bam" from_work_dir="sorted.bam"/> + <data name="mapped_reads_index" format="bai" label="${tool.name} on ${on_string}: mapped.bam.bai" from_work_dir="sorted.bam.bai"/> + --> </outputs> <help> Run the Monorail RNA-seq analysis pipeline