# HG changeset patch
# User chrisw
# Date 1549997917 18000
# Node ID 4104eb494bf89bd8b56c8cc5e4aa27e8e27aaf11
# Parent  d2d9937d1f9c03a51be7b064d2592b22111c7abb
Uploaded

diff -r d2d9937d1f9c -r 4104eb494bf8 monorail.xml
--- a/monorail.xml	Tue Feb 12 13:51:52 2019 -0500
+++ b/monorail.xml	Tue Feb 12 13:58:37 2019 -0500
@@ -103,17 +103,15 @@
 
         <!--    <expand macro="dbKeyActions" /> -->
 <outputs>
-        <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out">
-        </data>
-        <data format="interval" name="chimeric_junctions" label="${tool.name} on ${on_string}: chimeric junctions" from_work_dir="Chimeric.out.junction">
-        </data>
-
-        <data format="interval" name="splice_junctions" label="${tool.name} on ${on_string}: splice junctions.bed" from_work_dir="SJ.out.tab">
-        </data>
-        <data name="mapped_reads" format="bam" label="${tool.name} on ${on_string}: mapped.bam" from_work_dir="sorted.bam">
-        </data>
-        <data name="mapped_reads_index" format="bai" label="${tool.name} on ${on_string}: mapped.bam.bai" from_work_dir="sorted.bam.bai">
-        </data>
+        <data format="txt" name="output_log" label="${tool.name} on ${on_string}: log" from_work_dir="Log.final.out"/>
+        <data format="txt" name="auc" label="${tool.name} on ${on_string}: AUC" from_work_dir="bc.auc.tsv">
+        <data format="txt" name="bc_log" label="${tool.name} on ${on_string}: bamcount log" from_work_dir="bc.log">
+        <!-- 
+        <data format="interval" name="chimeric_junctions" label="${tool.name} on ${on_string}: chimeric junctions" from_work_dir="Chimeric.out.junction"/>
+        <data format="interval" name="splice_junctions" label="${tool.name} on ${on_string}: splice junctions.bed" from_work_dir="SJ.out.tab"/>
+        <data name="mapped_reads" format="bam" label="${tool.name} on ${on_string}: mapped.bam" from_work_dir="sorted.bam"/>
+        <data name="mapped_reads_index" format="bai" label="${tool.name} on ${on_string}: mapped.bam.bai" from_work_dir="sorted.bam.bai"/>
+        -->
     </outputs>
     <help>
         Run the Monorail RNA-seq analysis pipeline