Mercurial > repos > chrisw > data_manager_monorail_index_fetcher
changeset 4:cdf5caf02a4f draft
Uploaded
author | chrisw |
---|---|
date | Tue, 12 Nov 2019 00:36:45 -0500 |
parents | 1032e2599a5e |
children | 0299ada36cce |
files | data_manager_monorail_index/data_manager/data_manager.py |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager_monorail_index/data_manager/data_manager.py Tue Nov 12 00:24:25 2019 -0500 +++ b/data_manager_monorail_index/data_manager/data_manager.py Tue Nov 12 00:36:45 2019 -0500 @@ -25,13 +25,13 @@ data_manager_entry['value'] = args.name.lower() data_manager_entry['name'] = args.name jsonin = open(args.output).read() - sys.stderr.write(jsonin) + sys.stdout.write(jsonin) params = json.loads(jsonin) target_directory = params['output_data'][0]['extra_files_path'] data_manager_entry['path'] = params['output_data'][0]['extra_files_path'] data_manager_entry['exons_path'] = data_manager_entry['path'] + os.sep + ref + os.sep + 'gtf' + os.sep + 'exons.bed' data_manager_json = dict(data_tables=dict(monorail_index=data_manager_entry)) - file(args.output, 'w').write(json.dumps(data_manager_json)) + file(args.output, 'a').write(json.dumps(data_manager_json)) if __name__ == '__main__': main(args)