# HG changeset patch
# User chrisw
# Date 1573537005 18000
# Node ID cdf5caf02a4f8d94a1a9f234b731a329c45cdc1f
# Parent  1032e2599a5e469ac07b1aad7e0b4d6fce6ad7c3
Uploaded

diff -r 1032e2599a5e -r cdf5caf02a4f data_manager_monorail_index/data_manager/data_manager.py
--- a/data_manager_monorail_index/data_manager/data_manager.py	Tue Nov 12 00:24:25 2019 -0500
+++ b/data_manager_monorail_index/data_manager/data_manager.py	Tue Nov 12 00:36:45 2019 -0500
@@ -25,13 +25,13 @@
     data_manager_entry['value'] = args.name.lower()
     data_manager_entry['name'] = args.name
     jsonin = open(args.output).read()
-    sys.stderr.write(jsonin)
+    sys.stdout.write(jsonin)
     params = json.loads(jsonin)
     target_directory = params['output_data'][0]['extra_files_path']
     data_manager_entry['path'] = params['output_data'][0]['extra_files_path']
     data_manager_entry['exons_path'] = data_manager_entry['path'] + os.sep + ref + os.sep + 'gtf' + os.sep + 'exons.bed'
     data_manager_json = dict(data_tables=dict(monorail_index=data_manager_entry))
-    file(args.output, 'w').write(json.dumps(data_manager_json))
+    file(args.output, 'a').write(json.dumps(data_manager_json))
 
 if __name__ == '__main__':
     main(args)