Mercurial > repos > chrisw > data_manager_monorail_index_fetcher
changeset 5:0299ada36cce draft
Uploaded
| author | chrisw |
|---|---|
| date | Tue, 12 Nov 2019 01:18:47 -0500 |
| parents | cdf5caf02a4f |
| children | 0d90ce4ea724 |
| files | data_manager_monorail_index/.data_manager_conf.xml.swp data_manager_monorail_index/data_manager_conf.xml |
| diffstat | 2 files changed, 18 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/data_manager_monorail_index/data_manager_conf.xml Tue Nov 12 00:36:45 2019 -0500 +++ b/data_manager_monorail_index/data_manager_conf.xml Tue Nov 12 01:18:47 2019 -0500 @@ -4,11 +4,24 @@ <data_manager tool_file="data_manager/monorail_index_fetcher.xml" id="monorail_index_fetcher" version="1.0.0"> <data_table name="monorail_index"> <output> - <column name="value" /> - <column name="dbkey" /> - <column name="name" /> - <column name="path"/> - <column name="exons_path"/> + <column name="value"/> + <column name="dbkey"/> + <column name="name"/> + <column name="path" output_ref="out_file"> + <move relativize_symlinks="True" type="directory"> + <!-- <source>${path}</source> + out_file.extra_files_path is used as base by default + if no source, eg for type=directory, then refers to base + --> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">monorail_index/${name}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/monorail_index/${name}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + <column name="exons_path"> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/monorail_index/${name}/gtf/exons.bed</value_translation> + <value_translation type="function">abspath</value_translation> + </column> </output> </data_table> </data_manager>