# HG changeset patch
# User chrisw
# Date 1573539527 18000
# Node ID 0299ada36cce793477d8d151cd5e50470280585a
# Parent  cdf5caf02a4f8d94a1a9f234b731a329c45cdc1f
Uploaded

diff -r cdf5caf02a4f -r 0299ada36cce data_manager_monorail_index/.data_manager_conf.xml.swp
Binary file data_manager_monorail_index/.data_manager_conf.xml.swp has changed
diff -r cdf5caf02a4f -r 0299ada36cce data_manager_monorail_index/data_manager_conf.xml
--- a/data_manager_monorail_index/data_manager_conf.xml	Tue Nov 12 00:36:45 2019 -0500
+++ b/data_manager_monorail_index/data_manager_conf.xml	Tue Nov 12 01:18:47 2019 -0500
@@ -4,11 +4,24 @@
     <data_manager tool_file="data_manager/monorail_index_fetcher.xml" id="monorail_index_fetcher" version="1.0.0">
 		<data_table name="monorail_index">
 			<output>
-				<column name="value" />
-				<column name="dbkey" />
-				<column name="name" />
-				<column name="path"/>
-				<column name="exons_path"/>
+                <column name="value"/>
+				<column name="dbkey"/>
+                <column name="name"/>
+                <column name="path" output_ref="out_file">
+                    <move relativize_symlinks="True" type="directory">
+                        <!-- <source>${path}</source>
+                            out_file.extra_files_path is used as base by default
+                            if no source, eg for type=directory, then refers to base 
+                        -->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">monorail_index/${name}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/monorail_index/${name}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+				<column name="exons_path">
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/monorail_index/${name}/gtf/exons.bed</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
 			</output>
 		</data_table>
 	</data_manager>