Mercurial > repos > boris > package_ape_3_0
changeset 4:5df622f8147b draft
Deleted selected files
| author | boris |
|---|---|
| date | Thu, 06 Jun 2013 15:27:10 -0400 |
| parents | 66a948a7792e |
| children | 258d76d23df0 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 0 insertions(+), 25 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Thu Jun 06 09:36:36 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,25 +0,0 @@ -<tool_dependency> - <package name="R" version="2.15.0"> - <repository changeset_revision="562ebf52a8fe" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/"/> - </package> - <package name="ape" version="3.0-8"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://cran.r-project.org/src/contrib/ape_3.0-8.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="562ebf52a8fe" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> - <package name="R" version="2.15.0"/> - </repository> - </action> - <action type="make_directory">$INSTALL_DIR</action> - <action type="shell_command">R CMD INSTALL ape_3.0-8.tar.gz -l $INSTALL_DIR </action> - <action type="set_environment"> - <environment_variable name="R_HOME" action="set_to">$ENV[R_HOME]</environment_variable> - <environment_variable name="R_LIBS" action="set_to">$ENV[R_LIBS]</environment_variable> - <environment_variable name="R_LIBS" action="prepend_to">$INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme> - </package> -</tool_dependency> \ No newline at end of file