Mercurial > repos > boris > package_ape_3_0
changeset 5:258d76d23df0 draft
Uploaded
| author | boris |
|---|---|
| date | Thu, 06 Jun 2013 16:27:31 -0400 |
| parents | 5df622f8147b |
| children | 2cdf98970feb |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 26 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Jun 06 16:27:31 2013 -0400 @@ -0,0 +1,26 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="2.15.0"> + <repository changeset_revision="67a05901ed3d" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" /> + </package> + <package name="ape" version="3.0-8"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://cran.r-project.org/src/contrib/ape_3.0-8.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="67a05901ed3d" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <package name="R" version="2.15.0" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR</action> + <action type="shell_command"> export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD INSTALL ape_3.0-8.tar.gz -l $INSTALL_DIR </action> + <action type="set_environment"> + <environment_variable action="set_to" name="R_HOME">$ENV[R_HOME]</environment_variable> + <environment_variable action="set_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable> + <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme> + </package> +</tool_dependency>