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5
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="2.15.0">
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8
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4 <repository changeset_revision="f6b8f51b71a2" name="package_r_2_15" owner="boris" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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5
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5 </package>
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6 <package name="ape" version="3.0-8">
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7 <install version="1.0">
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8 <actions>
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9
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9 <action type="download_by_url">http://cran.at.r-project.org/src/contrib/Archive/ape/ape_3.0-8.tar.gz</action>
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5
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10 <action type="set_environment_for_install">
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8
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11 <repository changeset_revision="f6b8f51b71a2" name="package_r_2_15" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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5
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12 <package name="R" version="2.15.0" />
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13 </repository>
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14 </action>
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15 <action type="make_directory">$INSTALL_DIR</action>
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8
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16 <action type="shell_command"> export PATH=$PATH && export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && R CMD INSTALL ape_3.0-8.tar.gz -l $INSTALL_DIR </action>
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5
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17 <action type="set_environment">
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8
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18 <environment_variable action="set_to" name="PATH">$ENV[PATH]</environment_variable>
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5
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19 <environment_variable action="set_to" name="R_HOME">$ENV[R_HOME]</environment_variable>
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20 <environment_variable action="set_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>
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21 <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
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22 </action>
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23 </actions>
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24 </install>
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25 <readme> ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees</readme>
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26 </package>
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27 </tool_dependency>
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