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changeset 15:a4f2492ce714

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toolshed14
author biomonika <biomonika@psu.edu>
date Wed, 10 Sep 2014 11:30:31 -0400
parents b5b14e3e3c61
children 373cd706d44f
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Sep 10 11:07:54 2014 -0400
+++ b/tool_dependencies.xml	Wed Sep 10 11:30:31 2014 -0400
@@ -17,10 +17,6 @@
         </install>
         <readme>Compiling samtools with fPIC in order to create bam.h and compiled libbam.a files</readme>
     </package>
-
- <package name="perl" version="5.18.1">
-        <repository name="package_perl_5_18" owner="iuc" prior_installation_required="True" />
-    </package>
     <package name="bioperl" version="1.6.922">
         <install version="1.0">
             <actions>
@@ -34,18 +30,11 @@
                    <package>Bio::DB::Fasta</package>
                    <package>File::Slurp</package>
                    <package>Bio::DB::Sam</package>
-                   <package>PerlIO::gzip</package>
                 </action>
-                <action type="set_environment">
-                    <environment_variable name="PERL_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="shell_command">export PERL5LIB=$INSTALL_DIR</action>
             </actions>
         </install>
         <readme>
             Bundle::BioPerl
         </readme>
     </package>
-
-
 </tool_dependency>
\ No newline at end of file