# HG changeset patch
# User biomonika <biomonika@psu.edu>
# Date 1410363031 14400
# Node ID a4f2492ce714a704789c863fc73b4a1cfbb0db71
# Parent  b5b14e3e3c618f5c7e4534ca7ebba4ee388ffbb9
toolshed14

diff -r b5b14e3e3c61 -r a4f2492ce714 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Sep 10 11:07:54 2014 -0400
+++ b/tool_dependencies.xml	Wed Sep 10 11:30:31 2014 -0400
@@ -17,10 +17,6 @@
         </install>
         <readme>Compiling samtools with fPIC in order to create bam.h and compiled libbam.a files</readme>
     </package>
-
- <package name="perl" version="5.18.1">
-        <repository name="package_perl_5_18" owner="iuc" prior_installation_required="True" />
-    </package>
     <package name="bioperl" version="1.6.922">
         <install version="1.0">
             <actions>
@@ -34,18 +30,11 @@
                    <package>Bio::DB::Fasta</package>
                    <package>File::Slurp</package>
                    <package>Bio::DB::Sam</package>
-                   <package>PerlIO::gzip</package>
                 </action>
-                <action type="set_environment">
-                    <environment_variable name="PERL_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                </action>
-                <action type="shell_command">export PERL5LIB=$INSTALL_DIR</action>
             </actions>
         </install>
         <readme>
             Bundle::BioPerl
         </readme>
     </package>
-
-
 </tool_dependency>
\ No newline at end of file