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changeset 46:b716d69ac94b

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Uploaded
author bgruening
date Fri, 02 Aug 2013 12:48:54 -0400
parents ef436465bf16
children 56b3f9d4fafe
files tool_data_table_conf.xml.sample computeGCBias.xml correctGCBias.xml
diffstat 3 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/ tool_data_table_conf.xml.sample	Fri Aug 02 12:43:55 2013 -0400
+++ b/ tool_data_table_conf.xml.sample	Fri Aug 02 12:48:54 2013 -0400
@@ -1,3 +1,7 @@
 <tables>
-
+    <!-- Locations of 2bit sequence files for use in deepTools -->
+    <table name="deepTools_seqs" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="tool-data/deepTools_seqs.loc" />
+    </table>
 </tables>
--- a/computeGCBias.xml	Fri Aug 02 12:43:55 2013 -0400
+++ b/computeGCBias.xml	Fri Aug 02 12:48:54 2013 -0400
@@ -60,7 +60,7 @@
     </param>
     <when value="cached">
         <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">
-            <options from_data_table="lastz_seqs" />
+            <options from_data_table="deepTools_seqs" />
         </param>
     </when>
     <when value="history">
--- a/correctGCBias.xml	Fri Aug 02 12:43:55 2013 -0400
+++ b/correctGCBias.xml	Fri Aug 02 12:48:54 2013 -0400
@@ -42,7 +42,7 @@
     </param>
     <when value="cached">
         <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact your Galaxy team">
-            <options from_data_table="lastz_seqs" />
+            <options from_data_table="deepTools_seqs" />
         </param>
     </when>
     <when value="history">