Mercurial > repos > bgruening > upload_testing
changeset 47:56b3f9d4fafe
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 02 Aug 2013 12:51:32 -0400 |
| parents | b716d69ac94b |
| children | 1463dc12d1a3 |
| files | tool-data/deepTools_seqs.loc.sample |
| diffstat | 1 files changed, 30 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/deepTools_seqs.loc.sample Fri Aug 02 12:51:32 2013 -0400 @@ -0,0 +1,30 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of 2bit genome files for use with deepTools. You will +#need to supply these files and then create a deepTools_seqs.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The deepTools_seqs.loc +#file has this format (white space characters are TAB characters): +# +#<unique_build_id><display_name><file_path> +# +#So, for example, if your deepTools_seqs.loc began like this: +# +#hg18Human (Homo sapiens): hg18/depot/data2/galaxy/twobit/hg18.2bit +#hg19Human (Homo sapiens): hg19/depot/data2/galaxy/twobit/hg19.2bit +#mm9Mouse (Mus musculus): mm9/depot/data2/galaxy/twobit/mm9.2bit +# +#then your /depot/data2/galaxy/twobit/ directory +#would need to contain the following 2bit files: +# +#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit +#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit +# +#Your deepTools_seqs.loc file should include an entry per line for +#each file you have stored that you want to be available. Note that +#your files should all have the extension '2bit'. +# +#Note that for backwards compatibility with workflows, the unique ID of +#an entry must be the path that was in the original loc file, because that +#is the value stored in the workflow for that parameter. +#