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annotate tool_dependencies.xml @ 8:fbc64ecd5295

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blat, chmod +x
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Thu, 30 May 2013 12:01:04 +0200
parents 7dc2e62bb8b4
children f126b49e93e7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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Bjoern Gruening <bjoern.gruening@gmail.com>
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1 <?xml version="1.0"?>
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a666715dffa3 Uploaded
bgruening
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2 <tool_dependency>
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Bjoern Gruening <bjoern.gruening@gmail.com>
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3 <package name="blat" version="1.0.0">
Bjoern Gruening <bjoern.gruening@gmail.com>
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4 <install version="1.0">
Bjoern Gruening <bjoern.gruening@gmail.com>
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5 <actions>
Bjoern Gruening <bjoern.gruening@gmail.com>
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6 <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
Bjoern Gruening <bjoern.gruening@gmail.com>
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7 <action type="move_file">
Bjoern Gruening <bjoern.gruening@gmail.com>
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8 <source>blat</source>
Bjoern Gruening <bjoern.gruening@gmail.com>
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9 <destination>$INSTALL_DIR/bin</destination>
Bjoern Gruening <bjoern.gruening@gmail.com>
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10 </action>
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fbc64ecd5295 blat, chmod +x
Bjoern Gruening <bjoern.gruening@gmail.com>
parents: 7
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11 <action type="shell_command">chmod +x $INSTALL_DIR/bin/blat</action>
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Bjoern Gruening <bjoern.gruening@gmail.com>
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12 <action type="set_environment">
Bjoern Gruening <bjoern.gruening@gmail.com>
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
Bjoern Gruening <bjoern.gruening@gmail.com>
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14 </action>
Bjoern Gruening <bjoern.gruening@gmail.com>
parents: 6
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15 </actions>
Bjoern Gruening <bjoern.gruening@gmail.com>
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16 </install>
Bjoern Gruening <bjoern.gruening@gmail.com>
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17 <readme>
Bjoern Gruening <bjoern.gruening@gmail.com>
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18 The BLAT binary for linux x86_64 is retrieved from UCSC.
Bjoern Gruening <bjoern.gruening@gmail.com>
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19 </readme>
Bjoern Gruening <bjoern.gruening@gmail.com>
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20 </package>
Bjoern Gruening <bjoern.gruening@gmail.com>
parents: 6
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21 </tool_dependency>