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view tool_dependencies.xml @ 8:fbc64ecd5295

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blat, chmod +x
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Thu, 30 May 2013 12:01:04 +0200
parents 7dc2e62bb8b4
children f126b49e93e7
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line source

<?xml version="1.0"?>
<tool_dependency>
     <package name="blat" version="1.0.0">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
                 <action type="move_file">
                     <source>blat</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="shell_command">chmod +x $INSTALL_DIR/bin/blat</action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>
         </install>
         <readme>
The BLAT binary for linux x86_64 is retrieved from UCSC.
         </readme>
     </package>
</tool_dependency>