Mercurial > repos > bgruening > precommit_test

changeset 7:7dc2e62bb8b4

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blat
author Bjoern Gruening <bjoern.gruening@gmail.com>
date Thu, 30 May 2013 11:54:27 +0200
parents 1d21a699af8f
children fbc64ecd5295
files tool_dependencies.xml
diffstat 1 files changed, 19 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon May 27 16:28:31 2013 +0200
+++ b/tool_dependencies.xml	Thu May 30 11:54:27 2013 +0200
@@ -1,22 +1,20 @@
-<?xml version='1.0' encoding='utf-8'?>
+<?xml version="1.0"?>
 <tool_dependency>
-    <package name="rdkit" version="2012_12_1">
-        <repository changeset_revision="884c95a27e40" name="package_rdkit_2012_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="numpy" version="1.7.1">
-        <repository changeset_revision="1aa6410e151b" name="package_numpy_1_7" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-
-    <package name="matplotlib" version="1.2.1">
-        <repository changeset_revision="476a503cfcb3" name="package_matplotlib_1_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="chemfp" version="1.1p1">
-        <repository changeset_revision="00e31088ff16" name="package_chemfp_1_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="scipy" version="0.12.0">
-        <repository changeset_revision="2f333d603c2b" name="package_scipy_0_12" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-    <package name="bla" version="1.3.18">
-        <repository changeset_revision="972aa4e2c80c" name="upload_testing" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
-    </package>
-</tool_dependency>
\ No newline at end of file
+     <package name="blat" version="1.0.0">
+         <install version="1.0">
+             <actions>
+                 <action type="download_by_url">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
+                 <action type="move_file">
+                     <source>blat</source>
+                     <destination>$INSTALL_DIR/bin</destination>
+                 </action>
+                 <action type="set_environment">
+                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                 </action>
+             </actions>
+         </install>
+         <readme>
+The BLAT binary for linux x86_64 is retrieved from UCSC.
+         </readme>
+     </package>
+</tool_dependency>