annotate tool_dependencies.xml @ 9:d161fa47699c

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author bgruening
date Mon, 20 May 2013 15:10:01 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="lapack" version="3.4.2">
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4 <repository changeset_revision="11df6383f50a" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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5 </package>
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6 <package name="atlas" version="3.10.1">
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7 <repository changeset_revision="4e971abe695a" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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8 </package>
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9 <package name="numpy" version="1.7.1">
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10 <install version="1.0">
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11 <actions>
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12 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
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13 <action type="set_environment_for_install">
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14 <repository changeset_revision="4e971abe695a" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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15 <package name="atlas" version="3.10.1" />
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16 </repository>
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17 </action>
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18 <action type="set_environment_for_install">
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19 <repository changeset_revision="11df6383f50a" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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20 <package name="lapack" version="3.4.2" />
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21 </repository>
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22 </action>
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23 <action type="shell_command">echo $LAPACK_LIB_DIR/libblas.a > $INSTALL_DIR/bu.txt</action>
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24 <action type="shell_command">echo $ATLAS_LIB_DIR/libatlas.a > $INSTALL_DIR/au.txt</action>
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25 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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26 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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27 export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp;
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28 export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp;
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29 export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp;
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30 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
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31 <action type="set_environment">
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32 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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33 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
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34 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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35 <environment_variable action="set_to" name="BLAS">$LAPACK_LIB_DIR/libblas.a</environment_variable>
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36 <environment_variable action="set_to" name="LAPACK">$LAPACK_LIB_DIR/liblapack.a</environment_variable>
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37 <environment_variable action="set_to" name="ATLAS">$ATLAS_LIB_DIR/libatlas.a</environment_variable>
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38 </action>
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39 </actions>
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40 </install>
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41 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY.</readme>
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42 </package>
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43 </tool_dependency>