view tool_dependencies.xml @ 22:40db34c904df default tip

ChemicalToolBoX update.

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−<?xml version='1.0' encoding='utf-8'?>
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−<tool_dependency>
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−        <package name="lapack" version="3.4.2">
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−            <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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−        </package>
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−        <package name="atlas" version="3.10.1">
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−            <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
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−        </package>
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−        <package name="numpy" version="1.7.1">
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−            <install version="1.0">
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−                <actions>
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−                    <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
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−                    <action type="set_environment_for_install">
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−                        <repository changeset_revision="68df9078bf69" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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−                            <package name="atlas" version="3.10.1" />
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−                        </repository>
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−                        <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
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−                            <package name="lapack" version="3.4.2" />
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−                        </repository>
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−                    </action>
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−                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
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−                    <action language="cheetah" type="template_command">
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−                    export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp; 
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−                    
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−                    #if env.get('ATLAS_LIB_DIR', False):
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−                        export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a &amp;&amp; 
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−                    #end if
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−                    #if env.get('LAPACK_LIB_DIR', False):
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−                        export BLAS=$env.LAPACK_LIB_DIR/libblas.a &amp;&amp; 
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−                        export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a &amp;&amp; 
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−                    #end if
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−                    python setup.py install --home $env.INSTALL_DIR --install-scripts $env.INSTALL_DIR/bin
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−                    </action>
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−                    <action type="set_environment">
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−                        <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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−                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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−                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
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−                        <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
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−                        </action>
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−                </actions>
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−            </install>
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−            <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
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−        </package>
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−</tool_dependency>