view tool_dependencies.xml @ 9:d161fa47699c

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<?xml version="1.0"?>
<tool_dependency>
        <package name="lapack" version="3.4.2">
            <repository changeset_revision="11df6383f50a" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
        </package>
        <package name="atlas" version="3.10.1">
            <repository changeset_revision="4e971abe695a" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu/" />
        </package>
        <package name="numpy" version="1.7.1">
            <install version="1.0">
                <actions>
                    <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="4e971abe695a" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                            <package name="atlas" version="3.10.1" />
                        </repository>
                    </action>
                    <action type="set_environment_for_install">
                        <repository changeset_revision="11df6383f50a" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu/">
                            <package name="lapack" version="3.4.2" />
                        </repository>
                    </action>
                    <action type="shell_command">echo $LAPACK_LIB_DIR/libblas.a > $INSTALL_DIR/bu.txt</action>
                    <action type="shell_command">echo $ATLAS_LIB_DIR/libatlas.a > $INSTALL_DIR/au.txt</action>
                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
                    <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
                    export BLAS=$LAPACK_LIB_DIR/libblas.a &amp;&amp; 
                    export LAPACK=$LAPACK_LIB_DIR/liblapack.a &amp;&amp; 
                    export ATLAS=$ATLAS_LIB_DIR/libatlas.a &amp;&amp; 
                    python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
                    <action type="set_environment">
                        <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                        <environment_variable action="set_to" name="BLAS">$LAPACK_LIB_DIR/libblas.a</environment_variable>
                        <environment_variable action="set_to" name="LAPACK">$LAPACK_LIB_DIR/liblapack.a</environment_variable>
                        <environment_variable action="set_to" name="ATLAS">$ATLAS_LIB_DIR/libatlas.a</environment_variable>
                        </action>
                </actions>
            </install>
            <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY.</readme>
        </package>
</tool_dependency>