Mercurial > repos > bgruening > bismark
changeset 4:a4bd52c4ed46 draft
Uploaded
author | bgruening |
---|---|
date | Fri, 12 Oct 2012 09:31:36 -0400 |
parents | 678f31a13093 |
children | 045c0592c180 |
files | bismark_wrapper/bismark_methylation_extractor.xml bismark_wrapper/bismark_wrapper.xml bismark_wrapper/tool_dependencies.xml |
diffstat | 3 files changed, 4 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/bismark_wrapper/bismark_methylation_extractor.xml Fri Oct 12 09:29:51 2012 -0400 +++ b/bismark_wrapper/bismark_methylation_extractor.xml Fri Oct 12 09:31:36 2012 -0400 @@ -1,4 +1,4 @@ -<tool id="bismark_methylation_extractor" name="Bismark" version="0.7.7.1"> +<tool id="bismark_methylation_extractor" name="Bismark" version="0.7.7.2"> <!-- Wrapper compatible with Bismark version 0.7.7 --> <description>methylation extractor</description> <version_command>bismark_methylation_extractor --version</version_command>
--- a/bismark_wrapper/bismark_wrapper.xml Fri Oct 12 09:29:51 2012 -0400 +++ b/bismark_wrapper/bismark_wrapper.xml Fri Oct 12 09:31:36 2012 -0400 @@ -1,4 +1,4 @@ -<tool id="bismark" name="Bismark" version="0.7.7.1"> +<tool id="bismark" name="Bismark" version="0.7.7.2"> <!-- Wrapper compatible with Bismark version 0.7.7 --> <description>bisulfite mapper</description> <version_command>bismark --version</version_command>
--- a/bismark_wrapper/tool_dependencies.xml Fri Oct 12 09:29:51 2012 -0400 +++ b/bismark_wrapper/tool_dependencies.xml Fri Oct 12 09:31:36 2012 -0400 @@ -2,7 +2,7 @@ <tool_dependency> <!-- http://www.bioinformatics.babraham.ac.uk/projects/bismark/bismark_v0.7.7.tar.gz --> <package name="bowtie2" version="2.0.0-beta7"> - <install version="1.0"> + <install version="1.1"> <actions> <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.0.0-beta7/bowtie2-2.0.0-beta7-source.zip</action> <action type="shell_command">make</action> @@ -25,7 +25,7 @@ </package> <!-- We ship bismark with that wrapper, so we only need to set the PATH variable --> <package name="bismark"> - <install version="1.0"> + <install version="1.1"> <action type="move_file"> <source>bismark</source> <destination>$INSTALL_DIR/bin</destination>