# HG changeset patch
# User bgruening
# Date 1350048696 14400
# Node ID a4bd52c4ed46d04851311a418f8387c27c2d1f31
# Parent  678f31a1309380220af8a94399ce811dcdd58897
Uploaded

diff -r 678f31a13093 -r a4bd52c4ed46 bismark_wrapper/bismark_methylation_extractor.xml
--- a/bismark_wrapper/bismark_methylation_extractor.xml	Fri Oct 12 09:29:51 2012 -0400
+++ b/bismark_wrapper/bismark_methylation_extractor.xml	Fri Oct 12 09:31:36 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="bismark_methylation_extractor" name="Bismark" version="0.7.7.1">
+<tool id="bismark_methylation_extractor" name="Bismark" version="0.7.7.2">
     <!-- Wrapper compatible with Bismark version 0.7.7 -->
     <description>methylation extractor</description>
     <version_command>bismark_methylation_extractor --version</version_command>
diff -r 678f31a13093 -r a4bd52c4ed46 bismark_wrapper/bismark_wrapper.xml
--- a/bismark_wrapper/bismark_wrapper.xml	Fri Oct 12 09:29:51 2012 -0400
+++ b/bismark_wrapper/bismark_wrapper.xml	Fri Oct 12 09:31:36 2012 -0400
@@ -1,4 +1,4 @@
-<tool id="bismark" name="Bismark" version="0.7.7.1">
+<tool id="bismark" name="Bismark" version="0.7.7.2">
     <!-- Wrapper compatible with Bismark version 0.7.7 -->
     <description>bisulfite mapper</description>
     <version_command>bismark --version</version_command>
diff -r 678f31a13093 -r a4bd52c4ed46 bismark_wrapper/tool_dependencies.xml
--- a/bismark_wrapper/tool_dependencies.xml	Fri Oct 12 09:29:51 2012 -0400
+++ b/bismark_wrapper/tool_dependencies.xml	Fri Oct 12 09:31:36 2012 -0400
@@ -2,7 +2,7 @@
 <tool_dependency>
     <!-- http://www.bioinformatics.babraham.ac.uk/projects/bismark/bismark_v0.7.7.tar.gz -->
     <package name="bowtie2" version="2.0.0-beta7">
-        <install version="1.0">
+        <install version="1.1">
             <actions>
                 <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.0.0-beta7/bowtie2-2.0.0-beta7-source.zip</action>
                 <action type="shell_command">make</action>
@@ -25,7 +25,7 @@
     </package>
     <!-- We ship bismark with that wrapper, so we only need to set the PATH variable -->
     <package name="bismark">
-        <install version="1.0">
+        <install version="1.1">
                 <action type="move_file">
                     <source>bismark</source>
                     <destination>$INSTALL_DIR/bin</destination>