Mercurial > repos > bernhardlutz > spectral_hk

changeset 4:bdbf71f6480e draft

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Uploaded
author bernhardlutz
date Thu, 05 Dec 2013 15:57:34 -0500
parents 7fe7c27092e0
children 848f7c122f2f
files tool_dependencies.xml
diffstat 1 files changed, 18 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Dec 05 15:49:58 2013 -0500
+++ b/tool_dependencies.xml	Thu Dec 05 15:57:34 2013 -0500
@@ -1,20 +1,31 @@
+<?xml version="1.0"?>
 <tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="vienna_rna" version="1.8.5">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action>
-                <action type="command">./configure --prefix $INSTALL_DIR</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
                 <action type="change_directory">Perl</action>
-                <action type="command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
+                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
                 <action type="change_directory">..</action>
                 <action type="make_install" />
+                
+
 
                 <action type="set_environment">
-                    <environment_variable name="LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
-                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable name="C_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable>
-                    <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/perl/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
                 </action>
             </actions>
         </install>