Mercurial > repos > bernhardlutz > spectral_hk
view tool_dependencies.xml @ 4:bdbf71f6480e draft
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author | bernhardlutz |
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date | Thu, 05 Dec 2013 15:57:34 -0500 |
parents | 7fe7c27092e0 |
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<?xml version="1.0"?> <tool_dependency> <package name="perl" version="5.18.1"> <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="vienna_rna" version="1.8.5"> <install version="1.0"> <actions> <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> </action> <action type="shell_command">./configure --prefix $INSTALL_DIR</action> <action type="change_directory">Perl</action> <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action> <action type="change_directory">..</action> <action type="make_install" /> <action type="set_environment"> <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable> </action> </actions> </install> <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme> </package> </tool_dependency>