Mercurial > repos > bernhardlutz > spectral_hk
changeset 3:7fe7c27092e0 draft
Uploaded
author | bernhardlutz |
---|---|
date | Thu, 05 Dec 2013 15:49:58 -0500 |
parents | 1d177cf141ef |
children | bdbf71f6480e |
files | tool_dependencies.xml |
diffstat | 1 files changed, 13 insertions(+), 11 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Dec 05 14:55:37 2013 -0500 +++ b/tool_dependencies.xml Thu Dec 05 15:49:58 2013 -0500 @@ -1,21 +1,23 @@ -<?xml version="1.0"?> <tool_dependency> - <package name="spectral_hk" version="0.1"> + <package name="vienna_rna" version="1.8.5"> <install version="1.0"> <actions> - <action type="shell_command">git clone https://bitbucket.org/ncgc/spectral_hk.git</action> - <action type="shell_command">git reset --hard 4c2d2f36708798bbe49a4633df246fa065e2268a</action> - <action type="shell_command">make</action> - <action type="move_file"> - <source>spectral_hk</source> - <destination>$INSTALL_DIR/bin</destination> - </action> + <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action> + <action type="command">./configure --prefix $INSTALL_DIR</action> + <action type="change_directory">Perl</action> + <action type="command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action> + <action type="change_directory">..</action> + <action type="make_install" /> + <action type="set_environment"> + <environment_variable name="LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> + <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="C_INCLUDE_PATH" action="prepend_to">$INSTALL_DIR/include</environment_variable> + <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/perl/lib</environment_variable> </action> </actions> </install> - <readme>Compiling spectral_hk requires a C compiler (typically gcc)</readme> + <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme> </package> </tool_dependency> -