Mercurial > repos > bernhardlutz > spectral_hk
changeset 6:a77fa3336ba1 draft
Uploaded
| author | bernhardlutz |
|---|---|
| date | Thu, 05 Dec 2013 15:58:00 -0500 |
| parents | 848f7c122f2f |
| children | 5ccb3ea3cf0a |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Dec 05 15:58:00 2013 -0500 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="vienna_rna" version="1.8.5"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + </action> + <action type="shell_command">./configure --prefix $INSTALL_DIR</action> + <action type="change_directory">Perl</action> + <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action> + <action type="change_directory">..</action> + <action type="make_install" /> + + + + <action type="set_environment"> + <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> + <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> + <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable> + </action> + </actions> + </install> + <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme> + </package> +</tool_dependency>