Mercurial > repos > bernhardlutz > spectral_hk

changeset 7:5ccb3ea3cf0a draft

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Uploaded
author bernhardlutz
date Thu, 05 Dec 2013 16:14:55 -0500
parents a77fa3336ba1
children 84c90494b628
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Dec 05 15:58:00 2013 -0500
+++ b/tool_dependencies.xml	Thu Dec 05 16:14:55 2013 -0500
@@ -3,29 +3,23 @@
     <package name="perl" version="5.18.1">
         <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="vienna_rna" version="1.8.5">
+    <package name="vienna_rna" version="2.1.5">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action>
+                <action type="download_by_url">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-2.1.5.tar.gz</action>
                 <action type="set_environment_for_install">
                     <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
                 </action>
-                <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
-                <action type="change_directory">Perl</action>
-                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
-                <action type="change_directory">..</action>
-                <action type="make_install" />
-                
 
+                <action type="autoconf" />
 
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                     <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
-                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
                 </action>
             </actions>
         </install>