# HG changeset patch
# User bernhardlutz
# Date 1386278095 18000
# Node ID 5ccb3ea3cf0a858a061b1a0ef461ac2d10ad8439
# Parent  a77fa3336ba113167219e7ce44581052ff201342
Uploaded

diff -r a77fa3336ba1 -r 5ccb3ea3cf0a tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Dec 05 15:58:00 2013 -0500
+++ b/tool_dependencies.xml	Thu Dec 05 16:14:55 2013 -0500
@@ -3,29 +3,23 @@
     <package name="perl" version="5.18.1">
         <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="vienna_rna" version="1.8.5">
+    <package name="vienna_rna" version="2.1.5">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-1.8.5.tar.gz</action>
+                <action type="download_by_url">http://www.tbi.univie.ac.at/~ronny/RNA/packages/source/ViennaRNA-2.1.5.tar.gz</action>
                 <action type="set_environment_for_install">
                     <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
                 </action>
-                <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
-                <action type="change_directory">Perl</action>
-                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
-                <action type="change_directory">..</action>
-                <action type="make_install" />
-                
 
+                <action type="autoconf" />
 
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                     <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
-                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
                 </action>
             </actions>
         </install>